mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 34.5% | 136.1 / 73.9 | 126 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 31.5% | 88.2 / 59.7 | 109 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 27.4% | 110.2 / 55.9 | 109 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 526,792 | 0 | A | C | 20.6% | 395.3 / 100.4 | 220 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 48 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 186 (0.810) | 53 (0.320) | 11/420 | 19.3 | 28.0% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 138 (0.830) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 915469 = | 271 (1.180) | 11 (0.050) | 11/572 | 24.7 | 3.9% | coding (579/696 nt) | aqpZ | aquaporin Z |
| ? | NC_000913 | 915493 = | 272 (1.210) | coding (555/696 nt) | aqpZ | aquaporin Z | |||||
| * | ? | NC_000913 | 1911650 = | 243 (1.060) | 10 (0.050) | 10/556 | 24.9 | 4.1% | intergenic (+1/+45) | yebQ/htpX | putative transporter/putative endopeptidase |
| ? | NC_000913 | 1911680 = | 235 (1.070) | intergenic (+31/+15) | yebQ/htpX | putative transporter/putative endopeptidase | |||||
| * | ? | NC_000913 | 4542682 = | 293 (1.280) | 11 (0.050) | 10/562 | 25.1 | 3.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 276 (1.250) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2971140 = | 257 (1.120) | 10 (0.040) | 10/568 | 25.3 | 3.8% | intergenic (+7/‑131) | ygdQ/ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| ? | NC_000913 | 2971166 = | 252 (1.130) | intergenic (+33/‑105) | ygdQ/ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein | |||||
| * | ? | NC_000913 | 2900306 = | 273 (1.190) | 9 (0.040) | 9/548 | 25.4 | 3.4% | intergenic (‑33/‑286) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| ? | NC_000913 | 2900346 = | 253 (1.170) | intergenic (‑73/‑246) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein | |||||
| * | ? | NC_000913 | = 2630917 | 257 (1.120) | 9 (0.040) | 8/556 | 26.4 | 3.6% | intergenic (+52/+41) | yfgI/guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| ? | NC_000913 | = 2630921 | 241 (1.100) | intergenic (+56/+37) | yfgI/guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) | |||||
| * | ? | NC_000913 | = 4542690 | 292 (1.280) | 8 (0.040) | 8/562 | 26.6 | 2.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 276 (1.250) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1413022 = | 309 (1.350) | 8 (0.040) | 8/566 | 26.7 | 2.6% | coding (214/1236 nt) | intR | Rac prophage; integrase |
| ? | NC_000913 | 1413041 = | 295 (1.320) | coding (195/1236 nt) | intR | Rac prophage; integrase | |||||
| * | ? | NC_000913 | = 859192 | 262 (1.150) | 8 (0.040) | 8/564 | 26.7 | 3.0% | intergenic (‑131/+21) | ybiU/ybiV | DUF1479 family protein/sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase |
| ? | NC_000913 | = 859197 | 259 (1.160) | intergenic (‑136/+16) | ybiU/ybiV | DUF1479 family protein/sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase | |||||