mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 3,746,811 | 1 | .→T | 1.0% | 2.0 0.0 ‑0.4 | 191 | coding (718/987 nt) | yiaO | 2,3‑diketo‑L‑gulonate‑binding periplasmic protein |
| * | NC_000913 | 3,051,837 | 2 | .→A | 1.1% | 1.9 0.0 ‑0.3 | 181 | coding (481/1203 nt) | ubiI | 2‑octaprenylphenol hydroxylase, FAD‑dependent |
| * | NC_000913 | 3,435,814 | 1 | .→G | 1.1% | 1.9 0.0 ‑0.4 | 177 | coding (608/1290 nt) | rsmB | 16S rRNA m(5)C967 methyltransferase, SAM‑dependent |
| * | NC_000913 | 3,914,424 | 2 | .→G | 1.1% | 1.9 0.0 ‑0.5 | 176 | coding (777/1371 nt) | glmU | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| * | NC_000913 | 4,186,458 | 1 | .→G | 1.1% | 1.9 0.0 ‑0.3 | 183 | coding (1109/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| * | NC_000913 | 3,914,424 | 1 | .→C | 1.1% | 1.8 0.0 ‑0.5 | 176 | coding (777/1371 nt) | glmU | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| * | NC_000913 | 4,425,547 | 1 | .→C | 1.2% | 1.8 0.0 ‑0.5 | 173 | coding (28/315 nt) | priB | primosomal protein N |
| * | NC_000913 | 2,740,639 | 2 | .→C | 1.2% | 1.7 0.0 ‑0.3 | 173 | coding (512/1071 nt) | aroF | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible |
| * | NC_000913 | 2,997,449 | 0 | T→G | 100.0% | 1.6 | 1 | K51T (AAG→ACG) | insC1 | IS2 repressor TnpA |
| * | NC_000913 | 3,724,265 | 1 | .→G | 1.2% | 1.6 0.0 ‑0.1 | 171 | coding (133/2070 nt) | glyS | glycine tRNA synthetase, beta subunit |
| * | NC_000913 | 3,475,353 | 1 | .→C | 1.2% | 1.5 0.0 ‑0.1 | 173 | coding (366/387 nt) | tusD | sulfurtransferase for 2‑thiolation step of mnm(5)‑s(2)U34‑tRNA synthesis |
| * | NC_000913 | 2,928,331 | 2 | .→C | 1.1% | 1.4 0.0 ‑0.1 | 176 | coding (103/1290 nt) | sdaC | putative serine transporter |
| * | NC_000913 | 3,627,462 | 1 | .→G | 1.1% | 1.4 0.0 ‑0.4 | 175 | coding (2077/2736 nt) | rbbA | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| * | NC_000913 | 1,633,486 | 0 | G→T | 100.0% | 1.3 | 1 | intergenic (+181/‑136) | ydfK/pinQ | cold shock protein, function unknown, Qin prophage/Qin prophage; putative site‑specific recombinase |
| * | NC_000913 | 1,633,499 | 0 | T→G | 100.0% | 1.2 | 1 | intergenic (+194/‑123) | ydfK/pinQ | cold shock protein, function unknown, Qin prophage/Qin prophage; putative site‑specific recombinase |
| * | NC_000913 | 3,424,248 | 0 | C→. | 100.0% | 1.2 | 1 | noncoding (2536/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,254 | 1 | .→C | 100.0% | 1.2 | 1 | noncoding (2530/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,265 | 0 | A→. | 100.0% | 1.2 | 1 | noncoding (2519/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,475,353 | 2 | .→A | 1.2% | 1.2 0.0 ‑0.0 | 173 | coding (366/387 nt) | tusD | sulfurtransferase for 2‑thiolation step of mnm(5)‑s(2)U34‑tRNA synthesis |
| * | NC_000913 | 156,241 | 0 | A→T | 100.0% | 1.1 | 3 | intergenic (‑40/+58) | yadV/yadN | putative periplasmic pilin chaperone/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 3,424,242 | 0 | T→C | 100.0% | 1.1 | 1 | noncoding (2542/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,329 | 0 | C→A | 100.0% | 1.1 | 1 | noncoding (2455/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 2,069,990 | 0 | C→A | 100.0% | 1.0 | 1 | G64V (GGA→GTA) | insC1 | IS2 repressor TnpA |
| * | NC_000913 | 2,928,331 | 1 | .→G | 1.1% | 1.0 0.0 ‑0.0 | 176 | coding (103/1290 nt) | sdaC | putative serine transporter |
| * | NC_000913 | 3,424,225 | 0 | G→T | 100.0% | 1.0 | 1 | noncoding (2559/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,290 | 0 | C→A | 100.0% | 1.0 | 1 | noncoding (2494/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,633,496 | 0 | A→C | 100.0% | 0.9 | 1 | intergenic (+191/‑126) | ydfK/pinQ | cold shock protein, function unknown, Qin prophage/Qin prophage; putative site‑specific recombinase |
| * | NC_000913 | 3,942,324 | 0 | G→T | 100.0% | 0.9 | 1 | noncoding (517/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913 | 4,178,594 | 1 | .→A | 1.1% | 0.9 0.0 ‑0.0 | 175 | coding (148/429 nt) | rplK | 50S ribosomal subunit protein L11 |
| * | NC_000913 | 3,051,837 | 1 | .→C | 1.1% | 0.8 0.0 ‑0.0 | 181 | coding (481/1203 nt) | ubiI | 2‑octaprenylphenol hydroxylase, FAD‑dependent |
| * | NC_000913 | 3,458,753 | 1 | .→G | 1.1% | 0.8 0.0 ‑0.0 | 180 | coding (415/1482 nt) | gspE | general secretory pathway component, cryptic |
| * | NC_000913 | 3,475,353 | 5 | .→T | 1.2% | 0.8 0.0 ‑0.0 | 173 | coding (366/387 nt) | tusD | sulfurtransferase for 2‑thiolation step of mnm(5)‑s(2)U34‑tRNA synthesis |
| * | NC_000913 | 274,864 | 0 | C→G | 100.0% | 0.7 | 3 | S85T (AGC→ACC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 1,468,973 | 0 | A→C | 100.0% | 0.7 | 2 | T59T (ACT→ACG) | insC1 | IS2 repressor TnpA |
| * | NC_000913 | 1,633,466 | 0 | T→A | 100.0% | 0.7 | 1 | intergenic (+161/‑156) | ydfK/pinQ | cold shock protein, function unknown, Qin prophage/Qin prophage; putative site‑specific recombinase |
| * | NC_000913 | 1,633,469 | 0 | C→A | 100.0% | 0.7 | 1 | intergenic (+164/‑153) | ydfK/pinQ | cold shock protein, function unknown, Qin prophage/Qin prophage; putative site‑specific recombinase |
| * | NC_000913 | 2,997,459 | 0 | G→T | 100.0% | 0.7 | 1 | L48I (CTC→ATC) | insC1 | IS2 repressor TnpA |
| * | NC_000913 | 3,424,224 | 0 | T→A | 100.0% | 0.7 | 1 | noncoding (2560/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,228 | 0 | G→A | 100.0% | 0.7 | 1 | noncoding (2556/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,475,353 | 4 | .→G | 1.2% | 0.1 0.0 ‑0.0 | 173 | coding (366/387 nt) | tusD | sulfurtransferase for 2‑thiolation step of mnm(5)‑s(2)U34‑tRNA synthesis |
| * | NC_000913 | 3,755,829 | 1 | .→C | 1.1% | 0.1 0.0 ‑0.0 | 180 | coding (683/1539 nt) | aldB | aldehyde dehydrogenase B |