mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 1,212,080 | 1 | .→C | 100.0% | 2.4 | 4 | intergenic (‑77/+623) | iraM/ycgX | RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein |
| * | NC_000913 | 1,151,857 | 1 | .→A | 1.0% | 2.3 0.0 ‑0.4 | 208 | intergenic (+6/‑82) | acpP/fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| * | NC_000913 | 1,417,888 | 1 | .→T | 0.9% | 2.2 0.0 ‑0.5 | 216 | coding (121/171 nt) | ydaE | conserved protein, Rac prophage |
| * | NC_000913 | 4,403,509 | 1 | .→A | 1.0% | 2.2 0.0 ‑0.7 | 208 | coding (210/1005 nt) | hflC | HflB protease modulator specific for phage lambda cII repressor |
| * | NC_000913 | 1,299,563 | 0 | C→A | 100.0% | 2.1 | 2 | intergenic (+318/‑1619) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 4,187,204 | 1 | .→T | 0.9% | 2.1 0.0 ‑0.3 | 214 | coding (1855/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| * | NC_000913 | 1,212,220 | 0 | G→T | 100.0% | 2.0 | 1 | intergenic (‑217/+483) | iraM/ycgX | RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein |
| * | NC_000913 | 2,722,118 | 1 | .→G | 0.9% | 2.0 0.0 ‑0.7 | 213 | coding (2166/2661 nt) | pka | protein lysine acetyltransferase |
| * | NC_000913 | 3,056,359 | 1 | .→C | 0.9% | 2.0 0.0 ‑0.8 | 211 | coding (119/549 nt) | fau | 5‑formyltetrahydrofolate cyclo‑ligase family protein |
| * | NC_000913 | 3,373,334 | 1 | .→C | 0.9% | 2.0 0.0 ‑0.8 | 228 | coding (243/894 nt) | nanA | N‑acetylneuraminate lyase |
| * | NC_000913 | 4,174,631 | 1 | .→G | 1.0% | 2.0 0.0 ‑0.7 | 203 | coding (396/951 nt) | coaA | pantothenate kinase |
| * | NC_000913 | 15,126 | 1 | .→T | 0.9% | 1.8 0.0 ‑0.6 | 232 | coding (959/1131 nt) | dnaJ | chaperone Hsp40, DnaK co‑chaperone |
| * | NC_000913 | 308,930 | 1 | .→G | 0.9% | 1.8 0.0 ‑0.2 | 218 | coding (403/2526 nt) | ecpC | ECP production outer membrane protein |
| * | NC_000913 | 2,129,765 | 1 | .→A | 1.0% | 1.8 0.0 ‑0.3 | 205 | coding (1114/1218 nt) | wcaD | putative colanic acid polymerase |
| * | NC_000913 | 1,299,548 | 0 | C→A | 100.0% | 1.7 | 2 | intergenic (+303/‑1634) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 16,444 | 0 | C→A | 100.0% | 1.3 | 1 | L334I (CTC→ATC) | insL1 | IS186 transposase |
| * | NC_000913 | 1,751,520 | 1 | .→G | 0.9% | 1.2 0.0 ‑0.3 | 222 | coding (205/648 nt) | ydhW | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| * | NC_000913 | 3,424,146 | 0 | C→A | 100.0% | 1.2 | 1 | noncoding (2638/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,210 | 0 | C→A | 100.0% | 1.2 | 1 | noncoding (2574/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,020 | 0 | G→T | 100.0% | 1.2 | 1 | noncoding (1764/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,236 | 0 | T→C | 100.0% | 1.1 | 1 | noncoding (2548/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 2,013,619 | 1 | .→G | 0.9% | 1.0 0.0 ‑0.2 | 221 | coding (391/1659 nt) | fliF | flagellar basal‑body MS‑ring and collar protein |
| * | NC_000913 | 3,424,249 | 0 | C→A | 100.0% | 1.0 | 1 | noncoding (2535/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,262 | 0 | A→C | 100.0% | 1.0 | 1 | noncoding (2522/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,311 | 0 | A→C | 100.0% | 1.0 | 1 | noncoding (2473/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,313 | 0 | T→C | 100.0% | 1.0 | 1 | noncoding (2471/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 308,930 | 2 | .→A | 0.9% | 0.9 0.0 ‑0.1 | 218 | coding (403/2526 nt) | ecpC | ECP production outer membrane protein |
| * | NC_000913 | 1,299,515 | 0 | T→G | 100.0% | 0.9 | 2 | intergenic (+270/‑1667) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,299,526 | 0 | A→G | 100.0% | 0.9 | 2 | intergenic (+281/‑1656) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,287,768 | 1 | .→T | 0.9% | 0.8 0.0 ‑0.0 | 225 | intergenic (‑146/+14) | tyrT/purU | tRNA‑Tyr/formyltetrahydrofolate hydrolase |
| * | NC_000913 | 1,299,731 | 0 | T→G | 100.0% | 0.8 | 2 | intergenic (+486/‑1451) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,954,262 | 1 | .→T | 0.9% | 0.8 0.0 ‑0.2 | 233 | coding (821/972 nt) | cmoB | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
| * | NC_000913 | 3,424,151 | 0 | C→G | 100.0% | 0.8 | 1 | noncoding (2633/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,184 | 0 | T→G | 100.0% | 0.8 | 1 | noncoding (2600/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,048 | 0 | A→C | 100.0% | 0.8 | 1 | noncoding (1736/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,070 | 0 | A→C | 100.0% | 0.8 | 1 | noncoding (1714/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,834,481 | 1 | .→G | 1.0% | 0.8 0.0 ‑0.3 | 206 | coding (57/2319 nt) | yicI | putative alpha‑glucosidase |
| * | NC_000913 | 3,945,284 | 0 | G→A | 100.0% | 0.8 | 2 | noncoding (1581/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| * | NC_000913 | 3,917,862 | 2 | .→A | 0.9% | 0.7 0.0 ‑0.1 | 214 | coding (404/864 nt) | atpG | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| * | NC_000913 | 1,954,262 | 2 | .→G | 0.9% | 0.1 0.0 ‑0.1 | 233 | coding (821/972 nt) | cmoB | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
| * | NC_000913 | 3,474,174 | 1 | .→C | 0.9% | 0.1 0.0 ‑0.0 | 218 | intergenic (‑93/+4) | rpsG/rpsL | 30S ribosomal subunit protein S7/30S ribosomal subunit protein S12 |