mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 22.4% | 87.7 / 23.0 | 68 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 21.8% | 148.0 / 33.6 | 82 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 20.6% | 85.2 / 25.7 | 68 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 170 (0.950) | 52 (0.400) | 16/412 | 13.5 | 32.2% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 97 (0.750) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 4044087 | 193 (1.080) | 10 (0.060) | 10/520 | 20.2 | 5.4% | intergenic (+43/‑112) | dsbA/yihF | periplasmic protein disulfide isomerase I/DUF945 family protein |
| ? | NC_000913 | = 4044061 | 178 (1.090) | intergenic (+17/‑138) | dsbA/yihF | periplasmic protein disulfide isomerase I/DUF945 family protein | |||||
| * | ? | NC_000913 | = 3305912 | 164 (0.920) | 10 (0.060) | 10/554 | 21.1 | 5.8% | intergenic (‑95/+59) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| ? | NC_000913 | = 3305919 | 164 (0.940) | intergenic (‑102/+52) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 220064 | 189 (1.050) | 9 (0.050) | 9/558 | 21.9 | 4.6% | intergenic (‑69/+49) | rcsF/metQ | putative outer membrane protein/DL‑methionine transporter subunit |
| ? | NC_000913 | = 220068 | 187 (1.070) | intergenic (‑73/+45) | rcsF/metQ | putative outer membrane protein/DL‑methionine transporter subunit | |||||
| * | ? | NC_000913 | = 4542690 | 264 (1.470) | 8 (0.050) | 8/554 | 22.5 | 3.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 211 (1.220) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 264 (1.470) | 8 (0.050) | 8/554 | 22.5 | 3.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 213 (1.230) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2557028 | 176 (0.980) | 8 (0.050) | 8/562 | 22.7 | 4.4% | coding (270/888 nt) | eutC | ethanolamine ammonia‑lyase, small subunit (light chain) |
| ? | NC_000913 | = 2557083 | 176 (1.000) | coding (215/888 nt) | eutC | ethanolamine ammonia‑lyase, small subunit (light chain) | |||||
| * | ? | NC_000913 | 190773 = | 174 (0.970) | 7 (0.040) | 7/556 | 23.2 | 4.0% | intergenic (+174/‑84) | rpsB/tsf | 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts |
| ? | NC_000913 | 190796 = | 166 (0.950) | intergenic (+197/‑61) | rpsB/tsf | 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts | |||||
| * | ? | NC_000913 | = 2982463 | 204 (1.140) | 6 (0.030) | 6/556 | 24.0 | 3.0% | intergenic (‑281/+34) | araE/kduD | arabinose transporter/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase; KDG oxidoreductase; 20‑ketosteroid reductase |
| ? | NC_000913 | = 2982467 | 192 (1.100) | intergenic (‑285/+30) | araE/kduD | arabinose transporter/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase; KDG oxidoreductase; 20‑ketosteroid reductase | |||||
| * | ? | NC_000913 | = 4583124 | 172 (0.960) | 6 (0.030) | 6/558 | 24.1 | 3.4% | intergenic (‑76/+125) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583237 | 177 (1.010) | intergenic (‑189/+12) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||