mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 348 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 941,713 | 0 | T | G | 52.2% | 51.4 / 73.8 | 46 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 357,880 | 0 | T | C | 50.9% | 57.7 / 84.5 | 55 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 925,900 | 0 | A | G | 49.1% | 67.7 / 14.6 | 53 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 987,494 | 0 | T | G | 48.5% | 100.0 / 19.0 | 66 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 4,378,802 | 0 | A | C | 48.5% | 104.0 / 21.1 | 66 | V48G (GTA→GGA) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| * | NC_000913 | 2,248,431 | 0 | A | C | 48.3% | 81.0 / 22.7 | 60 | G34G (GGT→GGG) | lysP | lysine transporter |
| * | NC_000913 | 2,421,443 | 0 | A | C | 47.8% | 97.5 / 21.6 | 67 | Y40S (TAC→TCC) | folX | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 47.5% | 61.1 / 30.9 | 59 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 1,079,468 | 0 | A | G | 45.3% | 69.1 / 17.2 | 53 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 357,890 | 0 | C | A | 45.1% | 36.5 / 27.9 | 52 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,355,457 | 0 | A | C | 45.1% | 104.6 / 19.8 | 71 | T245P (ACC→CCC) | gltB | glutamate synthase, large subunit |
| * | NC_000913 | 1,312,210 | 0 | C | A | 45.0% | 105.4 / 21.5 | 60 | V13F (GTT→TTT) | yciA | acyl‑CoA esterase |
| * | NC_000913 | 504,640 | 0 | C | T | 44.4% | 57.6 / 31.5 | 64 | K19K (AAG→AAA) | fsr | putative fosmidomycin efflux system protein |
| * | NC_000913 | 1,376,505 | 0 | A | C | 44.4% | 82.9 / 17.1 | 54 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 1,312,227 | 0 | A | G | 44.3% | 94.7 / 17.3 | 61 | V7A (GTC→GCC) | yciA | acyl‑CoA esterase |
| * | NC_000913 | 2,903,692 | 0 | C | A | 43.1% | 87.3 / 40.0 | 58 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 3,001,164 | 0 | A | C | 42.4% | 92.1 / 20.2 | 59 | T274P (ACC→CCC) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |
| * | NC_000913 | 73,581 | 0 | A | C | 42.3% | 83.0 / 12.7 | 52 | V314G (GTA→GGA) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease |
| * | NC_000913 | 4,604,344 | 0 | C | T | 42.3% | 53.8 / 23.8 | 52 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 993,917 | 0 | A | C | 42.0% | 119.0 / 20.2 | 69 | V43G (GTG→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 372775 = | 69 (1.050) | 4 (0.060) | 4/292 | 12.1 | 5.4% | coding (661/810 nt) | mhpD | 2‑keto‑4‑pentenoate hydratase |
| ? | NC_000913 | 372789 = | 73 (1.130) | coding (675/810 nt) | mhpD | 2‑keto‑4‑pentenoate hydratase | |||||