mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 270 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,115,396 | 0 | A | C | 68.8% | 75.7 / 56.4 | 61 | L32R (CTG→CGG) | mdtG | putative drug efflux system protein |
| * | NC_000913 | 3,702,745 | 0 | A | C | 63.3% | 24.0 / 63.3 | 49 | S42A (TCG→GCG) | dppF | dipeptide/heme ABC transporter ATPas |
| * | NC_000913 | 1,317,249 | 0 | A | C | 50.0% | 3.6 / 67.8 | 44 | D389E (GAT→GAG) | trpB | tryptophan synthase, beta subunit |
| * | NC_000913 | 1,273,440 | 0 | T | G | 49.0% | 6.5 / 74.5 | 51 | K54Q (AAA→CAA) | ychN | putative sulfur relay protein |
| * | NC_000913 | 1,487,163 | 0 | C | T | 48.9% | 40.4 / 26.7 | 45 | intergenic (+200/‑72) | hrpA/ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding |
| * | NC_000913 | 3,508,662 | 0 | T | A | 48.1% | 67.6 / 23.9 | 55 | E384D (GAA→GAT) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 4,040,762 | 0 | C | G | 46.0% | 42.4 / 16.8 | 37 | intergenic (+126/+144) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| * | NC_000913 | 3,947,831 | 0 | T | G | 45.5% | 83.1 / 15.1 | 57 | N46T (AAC→ACC) | hdfR | flhDC operon transcriptional repressor |
| * | NC_000913 | 3,443,277 | 0 | A | C | 44.9% | 68.3 / 14.2 | 49 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 541,284 | 0 | A | G | 44.7% | 50.3 / 10.3 | 38 | G240G (GGA→GGG) | ybbY | putative uracil/xanthine transporter |
| * | NC_000913 | 3,508,657 | 0 | A | G | 44.4% | 67.6 / 15.2 | 54 | F386S (TTC→TCC) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 3,947,850 | 0 | C | T | 44.3% | 79.9 / 32.9 | 61 | E40K (GAA→AAA) | hdfR | flhDC operon transcriptional repressor |
| * | NC_000913 | 1,478,324 | 0 | T | G | 44.2% | 70.8 / 11.7 | 44 | G33G (GGT→GGG) | ynbB | putative CDP‑diglyceride synthase |
| * | NC_000913 | 4,287,719 | 0 | T | A | 43.6% | 57.8 / 39.8 | 55 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| * | NC_000913 | 2,578,143 | 0 | A | C | 42.6% | 94.4 / 15.4 | 54 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| * | NC_000913 | 1,535,789 | 0 | C | A | 42.5% | 53.3 / 17.3 | 47 | V24F (GTT→TTT) | yddE | PhzC‑PhzF family protein |
| * | NC_000913 | 1,576,077 | 0 | C | A | 42.5% | 54.7 / 25.2 | 48 | D515Y (GAT→TAT) | yddB | putative TonB‑dependent outer membrane receptor |
| * | NC_000913 | 1,376,505 | 0 | A | C | 42.3% | 84.0 / 16.2 | 54 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 4,301,182 | 0 | G | T | 42.0% | 56.1 / 25.0 | 50 | Q633K (CAA→AAA) | mdtO | membrane translocase (MDR) of MdtNOP efflux pump, PET family |
| * | NC_000913 | 599,576 | 0 | T | G | 41.7% | 87.4 / 19.0 | 61 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 36 (0.610) | 20 (0.380) | 19/266 | 3.6 | 33.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 48 (0.910) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||