mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 38,511 | T→G | E202A (GAA→GCA) | caiB ← | crotonobetainyl CoA:carnitine CoA transferase |
| RA | 46,153 | T→G | I116S (ATC→AGC) | yaaU → | putative MFS sugar transporter; membrane protein |
| RA | 73,316 | T→G | Q402H (CAA→CAC) | thiP ← | thiamine/thiamine pyrophosphate ABC transporter permease |
| RA | 76,552 | T→G | I250L (ATC→CTC) | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| RA | 99,341 | G→T | V313V (GTG→GTT) | ftsW → | putative lipid II flippase; integral membrane protein; FtsZ ring stabilizer |
| RA | 111,305 | G→T | E88* (GAA→TAA) | mutT → | dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 136,062 | T→G | K135Q (AAG→CAG) | speE ← | spermidine synthase (putrescine aminopropyltransferase) |
| RA | 141,869 | T→G | S147A (TCG→GCG) | hpt → | hypoxanthine phosphoribosyltransferase |
| RA | 180,550 | T→G | P438P (CCT→CCG) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
| RA | 223,342 | T→G | D170E (GAT→GAG) | gmhB → | D,D‑heptose 1,7‑bisphosphate phosphatase |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| RA | 289,154 | A→C | I3M (ATT→ATG) | yagI ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| RA | 339,705 | A→C | K461Q (AAA→CAA) | yahG → | DUF1116 family protein |
| RA | 348,568 | A→G | intergenic (‑125/‑114) | prpR ← / → prpB | propionate catabolism operon regulatory protein/2‑methylisocitrate lyase |
| RA | 351,204 | A→C | intergenic (+23/‑11) | prpC → / → prpD | 2‑methylcitrate synthase/2‑methylcitrate dehydratase |
| RA | 368,831 | A→C | D74A (GAT→GCT) | mhpA → | 3‑(3‑hydroxyphenyl)propionate hydroxylase |
| RA | 409,800 | T→G | I74L (ATC→CTC) | rdgC ← | nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function |
| RA | 435,380 | A→C | K82Q (AAA→CAA) | nusB → | transcription antitermination protein |
| RA | 473,347 | T→G | S128A (TCG→GCG) | amtB → | ammonium transporter |
| RA | 531,370 | A→C | D284E (GAT→GAG) | allS ← | allD operon transcriptional activator |
| RA | 534,927 | A→C | K338Q (AAA→CAA) | gcl → | glyoxylate carboligase |
| RA | 573,949 | T→G | intergenic (+79/‑7) | ylcG → / → quuD | uncharacterized protein, DLP12 prophage/DLP12 prophage; putative antitermination protein |
| RA | 601,318 | A→C | N869H (AAC→CAC) | cusA → | copper/silver efflux system, membrane component |
| RA | 629,546 | A→C | T83P (ACA→CCA) | entH → | enterobactin synthesis proofreading thioesterase |
| RA | 652,430 | T→G | S66A (TCC→GCC) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
| RA | 677,883 | T→G | L157V (TTA→GTA) | djlB → | putative HscC co‑chaperone, uncharacterized J domain‑containing protein |
| RA | 714,075 | T→G | V173G (GTG→GGG) | pgm → | phosphoglucomutase |
| RA | 739,405 | T→G | R135R (CGT→CGG) | ybgA → | DUF1722 family protein |
| RA | 765,808 | A→C | L23R (CTT→CGT) | mngR ← | transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon |
| RA | 794,554 | A→C | S31A (TCC→GCC) | modE ← | transcriptional repressor for the molybdenum transport operon modABC |
| RA | 867,196 | A→C | D210A (GAT→GCT) | iaaA → | Isoaspartyl peptidase |
| RA | 869,818 | A→C | E136D (GAA→GAC) | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 888,948 | T→G | E291A (GAA→GCA) | ybjL ← | putative transporter |
| RA | 891,141 | A→C | N77H (AAC→CAC) | ybjC → | DUF1418 family protein |
| RA | 901,646 | A→C | F202C (TTT→TGT) | artQ ← | arginine ABC transporter permease |
| RA | 961,445 | T→G | L82R (CTC→CGC) | cmk → | cytidylate kinase |
| RA | 987,537 | A→C | intergenic (‑555/+48) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,938 | A→C | F350V (TTT→GTT) | asnS ← | asparaginyl tRNA synthetase |
| RA | 994,244 | T→G | I197L (ATT→CTT) | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 1,021,095 | A→C | intergenic (‑176/‑43) | sulA ← / → sxy | SOS cell division inhibitor/CRP‑S‑dependent promoter expression factor |
| RA | 1,052,447 | T→G | K306Q (AAA→CAA) | yccM ← | putative 4Fe‑4S membrane protein |
| RA | 1,098,052 | A→C | D56A (GAT→GCT) | ghrA → | glyoxylate/hydroxypyruvate reductase A |
| RA | 1,104,872 | T→G | F142L (TTT→TTG) | csgA → | curlin subunit, amyloid curli fibers, cryptic |
| RA | 1,133,235 | T→G | I221S (ATT→AGT) | flgE → | flagellar hook protein |
| RA | 1,145,255 | A→C | N106H (AAT→CAT) | rluC → | 23S rRNA pseudouridine(955,2504,2580) synthase |
| RA | 1,184,728 | T→G | K289N (AAA→AAC) | potA ← | spermidine/putrescine ABC transporter ATPase |
| RA | 1,194,916 | T→G | Q12H (CAA→CAC) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,201,688 | A→C | T64T (ACA→ACC) | ymfI → | e14 prophage; uncharacterized protein |
| RA | 1,214,780 | A→C | L232L (CTT→CTG) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; inactive c‑di‑GMP phosphodiesterase‑like EAL domain protein |
| RA | 1,253,248 | T→G | N902T (AAC→ACC) | ycgV ← | putative adhesin |
| RA | 1,265,930 | A→C | N307H (AAC→CAC) | prfA → | peptide chain release factor RF‑1 |
| RA | 1,296,022 | A→C | R700R (CGT→CGG) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| RA | 1,317,315 | A→C | D367E (GAT→GAG) | trpB ← | tryptophan synthase, beta subunit |
| RA | 1,324,533 | A→C | M146L (ATG→CTG) | yciO → | putative RNA binding protein |
| RA | 1,374,400 | T→G | F104C (TTT→TGT) | ycjP → | putative sugar ABC transporter permease |
| RA | 1,428,685 | A→C | T14T (ACT→ACG) | insH1 ← | IS5 transposase and trans‑activator |
| RA | 1,453,097 | T→G | P182P (CCA→CCC) | paaZ ← | oxepin‑CoA hydrolase and 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,465,307 | A→C | intergenic (‑77/‑85) | ynbG ← / → ydbA | uncharacterized protein/pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,492,314 | T→G | intergenic (‑185/‑156) | mokB ← / → trg | regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,498,172 | A→C | E439D (GAA→GAC) | opgD → | OPG biosynthetic periplasmic protein |
| RA | 1,515,898 | T→G | V107V (GTT→GTG) | patD → | gamma‑aminobutyraldehyde dehydrogenase |
| RA | 1,523,163 | A→C | intergenic (‑98/‑144) | yncD ← / → yncE | putative iron outer membrane transporter/ATP‑binding protein, periplasmic, function unknown |
| RA | 1,607,228 | A→C | K77T (AAA→ACA) | lsrG → | autoinducer‑2 (AI‑2) degrading protein LsrG |
| RA | 1,619,441 | T→G | C108G (TGT→GGT) | marR → | transcriptional repressor of multiple antibiotic resistance |
| RA | 1,621,483 | T→G | I51S (ATT→AGT) | ydeE → | putative transporter |
| RA | 1,657,342 | A→C | F39C (TTT→TGT) | ynfC ← | UPF0257 family lipoprotein |
| RA | 1,658,755 | T→G | G229G (GGT→GGG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,676,640 | T→G | K422Q (AAA→CAA) | pntA ← | pyridine nucleotide transhydrogenase, alpha subunit |
| RA | 1,755,502 | T→G | intergenic (‑361/‑196) | ydhZ ← / → pykF | uncharacterized protein/pyruvate kinase I |
| RA | 1,804,989 | T→G | pseudogene (1472/1476 nt) | arpB → | pseudogene, ankyrin repeats |
| RA | 1,837,673 | A→C | V154V (GTA→GTC) | ynjC → | putative ABC transporter permease |
| RA | 1,842,229 | T→G | intergenic (‑94/‑142) | ynjH ← / → gdhA | DUF1496 family protein/glutamate dehydrogenase, NADP‑specific |
| RA | 1,856,690 | T→G | E80A (GAG→GCG) | ydjH ← | putative kinase |
| RA | 1,870,696 | T→G | I104M (ATT→ATG) | yeaI → | putative membrane‑anchored diguanylate cyclase |
| RA | 1,898,641 | T→G | L72R (CTT→CGT) | yoaD → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production |
| RA | 1,930,199 | T→G | K64N (AAA→AAC) | yebF ← | extracellular Colicin M immunity family protein |
| RA | 1,935,635 | T→G | D227A (GAT→GCT) | zwf ← | glucose‑6‑phosphate 1‑dehydrogenase |
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| RA | 1,994,716 | A→C | L215* (TTA→TGA) | uvrY ← | response regulator in two‑component regulatory system with BarA |
| RA | 1,999,514 | T→G | intergenic (‑34/+71) | dcyD ← / ← fliY | D‑cysteine desulfhydrase, PLP‑dependent/cystine transporter subunit |
| RA | 2,013,101 | T→G | intergenic (‑87/‑128) | fliE ← / → fliF | flagellar basal‑body component/flagellar basal‑body MS‑ring and collar protein |
| RA | 2,016,025 | A→C | E53A (GAG→GCG) | fliH → | negative regulator of FliI ATPase activity |
| RA | 2,021,189 | T→G | A34A (GCT→GCG) | fliN → | flagellar motor switching and energizing component |
| RA | 2,062,145 | A→C | intergenic (‑212/‑115) | nac ← / → asnV | nitrogen assimilation regulon transcriptional regulator; autorepressor/tRNA‑Asn |
| RA | 2,085,613 | A→C | intergenic (‑88/+91) | yeeE ← / ← plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity |
| RA | 2,098,442 | A→C | intergenic (‑141/+5) | wzzB ← / ← ugd | regulator of length of O‑antigen component of lipopolysaccharide chains/UDP‑glucose 6‑dehydrogenase |
| RA | 2,107,808 | T→G | R174S (AGA→AGC) | glf ← | UDP‑galactopyranose mutase, FAD/NAD(P)‑binding |
| RA | 2,124,845 | A→C | L301R (CTG→CGG) | wcaI ← | putative glycosyl transferase |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,312,206 | A→C | F182V (TTT→GTT) | ompC ← | outer membrane porin protein C |
| RA | 2,321,945 | A→C | Q27P (CAA→CCA) | atoC → | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein |
| RA | 2,348,730 | T→G | C73G (TGT→GGT) | yfaE → | ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance |
| RA | 2,356,017 | T→G | F166C (TTT→TGT) | glpC → | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster |
| RA | 2,376,074 | A→C | L249R (CTG→CGG) | menB ← | dihydroxynaphthoic acid synthetase |
| RA | 2,380,295 | A→C | C117G (TGT→GGT) | menF ← | isochorismate synthase 2 |
| RA | 2,438,570 | A→C | P207P (CCA→CCC) | flk → | putative flagella assembly protein |
| RA | 2,486,868 | T→G | V832G (GTC→GGC) | evgS → | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| RA | 2,492,875 | A→C | F127C (TTT→TGT) | frc ← | formyl‑CoA transferase, NAD(P)‑binding |
| RA | 2,517,660 | A→C | I58S (ATC→AGC) | yfeA ← | putative diguanylate cyclase |
| RA | 2,521,793 | T→G | N229H (AAT→CAT) | xapR ← | transcriptional activator of xapAB |
| RA | 2,546,546 | T→G | I258M (ATT→ATG) | murQ → | N‑acetylmuramic acid 6‑phosphate (MurNAc‑6‑P) etherase |
| RA | 2,593,811 | A→C | intergenic (‑41/+33) | ypfH ← / ← tmcA | palmitoyl‑CoA esterase activity, uncertain physiological substrate/elongator methionine tRNA (ac4C34) acetyltransferase |
| RA | 2,615,642 | T→G | I80I (ATA→ATC) | yfgO ← | putative UPF0118 family inner membrane permease |
| RA | 2,615,883 | A→C | intergenic (‑2/‑211) | yfgO ← / → bepA | putative UPF0118 family inner membrane permease/OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| RA | 2,648,982 | A→C | I1102M (ATT→ATG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,702,600 | T→G | K263Q (AAA→CAA) | era ← | membrane‑associated, 16S rRNA‑binding GTPase |
| RA | 2,704,662 | T→G | E216D (GAA→GAC) | lepB ← | leader peptidase (signal peptidase I) |
| RA | 2,724,576 | A→C | Y391D (TAC→GAC) | kgtP ← | alpha‑ketoglutarate transporter |
| RA | 2,732,833 | T→G | E447D (GAA→GAC) | clpB ← | protein disaggregation chaperone |
| RA | 2,753,923 | A→C | K107Q (AAA→CAA) | bamE → | lipoprotein component of BamABCDE OM biogenesis complex |
| RA | 2,761,653 | A→C | L630V (TTG→GTG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,766,683 | A→C | T256P (ACC→CCC) | rnlA → | CP4‑57 prophage; RNase LS |
| RA | 2,778,122 | A→C | intergenic (+340/+24) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,799,511 | A→C | S116S (TCA→TCC) | alaE → | alanine exporter, alanine‑inducible, stress‑responsive |
| RA | 2,805,674 | T→G | L287* (TTA→TGA) | proV → | glycine betaine/proline ABC transporter periplasmic binding protein |
| RA | 2,806,796 | A→C | T263P (ACC→CCC) | proW → | glycine betaine/proline ABC transporter permease |
| RA | 2,815,599 | T→G | K281Q (AAA→CAA) | gshA ← | glutamate‑cysteine ligase |
| RA | 2,822,103 | A→C | intergenic (‑92/+36) | alaS ← / ← recX | alanyl‑tRNA synthetase/regulatory protein for RecA |
| RA | 2,863,239 | T→G | L302R (CTG→CGG) | ygbK → | FliA‑regulated DUF1537 family protein |
| RA | 3,015,808 | T→G | intergenic (+70/‑252) | mocA → / → ygfK | CTP:molybdopterin cytidylyltransferase/putative Fe‑S subunit oxidoreductase subunit |
| RA | 3,027,187 | A→C | K23Q (AAA→CAA) | ghxQ → | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter |
| RA | 3,062,456 | A→C | E536A (GAA→GCA) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,075,015 | T→G | S61R (AGC→CGC) | yggD ← | MtlR family putative transcriptional repressor |
| RA | 3,084,833 | T→G | E360A (GAA→GCA) | speA ← | biosynthetic arginine decarboxylase, PLP‑binding |
| RA | 3,093,773 | A→C | K92Q (AAG→CAG) | yqgF → | putative Holliday junction resolvase |
| RA | 3,268,329 | T→G | I159S (ATT→AGT) | yhaB → | uncharacterized protein |
| RA | 3,269,279 | A→C | N289H (AAC→CAC) | yhaC → | pentapetide repeats‑related protein |
| RA | 3,282,649 | A→C | K225T (AAA→ACA) | agaS → | tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,310,939 | A→C | F77C (TTC→TGC) | pnp ← | polynucleotide phosphorylase/polyadenylase |
| RA | 3,343,061 | T→G | S76A (TCG→GCG) | lptC → | periplasmic membrane‑anchored LPS‑binding protein; LPS export protein |
| RA | 3,350,729 | T→G | E766A (GAA→GCA) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| RA | 3,365,608 | T→G | intergenic (+57/+94) | yhcE → / ← insH1 | pseudogene fragment; interrupted by IS5/IS5 transposase and trans‑activator |
| RA | 3,377,387 | T→G | T12P (ACG→CCG) | sspA ← | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| RA | 3,383,818 | T→G | I151L (ATC→CTC) | mdh ← | malate dehydrogenase, NAD(P)‑binding |
| RA | 3,392,795 | A→C | I1155S (ATT→AGT) | yhdP ← | DUF3971‑AsmA2 domains protein |
| RA | 3,422,588 | A→C | K51N (AAA→AAC) | yhdZ → | putative amino acid ABC transporter ATPase |
| RA | 3,431,682 | T→G | E94A (GAA→GCA) | yrdD ← | ssDNA‑binding protein, function unknown |
| RA | 3,456,471 | T→G | F32C (TTC→TGC) | gspD → | general secretory pathway component, cryptic |
| RA | 3,468,693 | T→G | T387T (ACA→ACC) | chiA ← | periplasmic endochitinase |
| RA | 3,478,998 | T→G | H537P (CAT→CCT) | kefB ← | potassium:proton antiporter |
| RA | 3,484,500 | A→C | K4T (AAA→ACA) | prkB → | putative phosphoribulokinase |
| RA | 3,493,473 | T→G | A302A (GCT→GCG) | tsgA → | putative transporter |
| RA | 3,494,086 | T→G | S26A (TCT→GCT) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
| RA | 3,496,373 | A→C | E788A (GAA→GCA) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
| RA | 3,552,399 | A→C | N25K (AAT→AAG) | malP ← | maltodextrin phosphorylase |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,565,832 | A→C | G250G (GGT→GGG) | glgP ← | glycogen phosphorylase |
| RA | 3,640,281 | T→G | D57E (GAT→GAG) | uspA → | universal stress global response regulator |
| RA | 3,651,303 | T→G | pseudogene (13/741 nt) | yhiS → | pseudogene |
| RA | 3,666,292 | T→G | E430A (GAA→GCA) | gadA ← | glutamate decarboxylase A, PLP‑dependent |
| RA | 3,760,776 | T→G | L158F (TTA→TTC) | selA ← | selenocysteine synthase |
| RA | 3,766,728 | A→C | E131A (GAA→GCA) | yibA → | putative immunity protein for polymorphic toxin RhsA; HEAT‑domain protein; lethality reduction protein |
| RA | 3,771,984 | A→C | intergenic (‑240/‑297) | yibI ← / → mtlA | DUF3302 family inner membrane protein/mannitol‑specific PTS enzyme: IIA, IIB and IIC components |
| RA | 3,772,302 | A→C | K8Q (AAA→CAA) | mtlA → | mannitol‑specific PTS enzyme: IIA, IIB and IIC components |
| RA | 3,780,450 | A→C | S208S (TCA→TCC) | lldD → | L‑lactate dehydrogenase, FMN‑linked |
| RA | 3,806,922 | A→C | F49C (TTT→TGT) | waaG ← | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I |
| RA | 3,833,087 | T→G | Y484S (TAC→TCC) | yicI ← | putative alpha‑glucosidase |
| RA | 3,843,762 | T→G | S10R (AGT→CGT) | adeQ ← | adenine permease, high affinity; adenine:H+ symporter |
| RA | 3,864,289 | A→C | K131Q (AAA→CAA) | yidP → | UTRA domain‑containing GntR family putative transcriptional regulator |
| RA | 3,874,407 | T→G | D23A (GAC→GCC) | dgoK ← | 2‑oxo‑3‑deoxygalactonate kinase |
| RA | 3,898,177 | T→G | V52V (GTT→GTG) | cbrC → | UPF0167 family protein |
| RA | 3,968,363 | A→C | N150H (AAT→CAT) | wecA → | UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| RA | 3,970,454 | T→G | Y108D (TAT→GAT) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| RA | 4,005,207 | T→G | S116A (TCC→GCC) | pldA → | outer membrane phospholipase A |
| RA | 4,045,010 | A→C | E271A (GAA→GCA) | yihF → | DUF945 family protein |
| RA | 4,076,337 | T→G | F64L (TTT→TTG) | yihY → | BrkB family putative transporter, inner membrane protein |
| RA | 4,078,641 | A→C | intergenic (+203/‑656) | yiiD → / → yiiE | GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator |
| RA | 4,116,511 | T→G | I238L (ATT→CTT) | glpK ← | glycerol kinase |
| RA | 4,152,771 | T→G | K110Q (AAA→CAA) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,179,175 | T→G | D99E (GAT→GAG) | rplA → | 50S ribosomal subunit protein L1 |
| RA | 4,182,877 | T→G | F545V (TTC→GTC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,187,714 | A→C | K789Q (AAA→CAA) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,190,510 | T→G | intergenic (+185/+225) | yjaZ → / ← thiH | stationary phase growth adaptation protein/tyrosine lyase, involved in thiamine‑thiazole moiety synthesis |
| RA | 4,217,768 | T→G | A220A (GCT→GCG) | aceA → | isocitrate lyase |
| RA | 4,237,239 | A→C | I115L (ATC→CTC) | yjbG → | extracellular polysaccharide export OMA protein |
| RA | 4,255,533 | A→C | Y312D (TAC→GAC) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
| RA | 4,276,646 | T→G | F392L (TTT→TTG) | yjcC → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,304,733 | T→G | K622T (AAA→ACA) | yjcS ← | metallo‑beta‑lactamase superfamily protein |
| RA | 4,313,739 | A→C | E130D (GAA→GAC) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
| RA | 4,368,231 | T→G | N33H (AAC→CAC) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,396,687 | T→G | I208S (ATC→AGC) | amiB → | N‑acetylmuramoyl‑l‑alanine amidase II |
| RA | 4,399,742 | A→C | D164A (GAT→GCT) | miaA → | delta(2)‑isopentenylpyrophosphate tRNA‑adenosine transferase |
| RA | 4,462,366 | T→G | N99H (AAC→CAC) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,516,206 | T→G | N158H (AAC→CAC) | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,535,814 | T→G | pseudogene (812/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
| RA | 4,543,958 | T→G | V77V (GTT→GTG) | fimI → | fimbrial protein involved in type 1 pilus biosynthesis |
| RA | 4,544,628 | A→C | N109H (AAC→CAC) | fimC → | periplasmic chaperone |
| RA | 4,573,896 | A→C | pseudogene (1483/1503 nt) | yjiT → | pseudogene |
| RA | 4,584,054 | A→C | L903R (CTC→CGC) | hsdR ← | endonuclease R Type I restriction enzyme |
| RA | 4,586,090 | A→C | A224A (GCT→GCG) | hsdR ← | endonuclease R Type I restriction enzyme |
| RA | 4,615,786 | T→G | E427A (GAA→GCA) | yjjI ← | DUF3029 family protein, putative glycine radical enzyme |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423726–3424234 | 3424584–3424238 | 5–859 | 31 [29] | [29] 31 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 43 (0.730) | 29 (0.550) | 28/266 | 1.8 | 39.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 51 (0.960) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 52 (0.900) | 46/290 | 0.5 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||