mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 119 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,684,749 | 0 | A | C | 57.7% | 26.7 / 39.2 | 26 | D164A (GAC→GCC) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| * | NC_000913 | 1,356,201 | 0 | T | G | 52.9% | 34.1 / 51.8 | 34 | T304P (ACC→CCC) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| * | NC_000913 | 357,890 | 0 | C | A | 52.4% | 17.6 / 35.3 | 21 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,984,718 | 0 | G | C | 48.3% | 29.3 / 13.2 | 31 | P292R (CCG→CGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 650,464 | 0 | A | T | 44.4% | 48.6 / 15.6 | 36 | R9R (CGT→CGA) | citE | citrate lyase, citryl‑ACP lyase (beta) subunit |
| * | NC_000913 | 4,604,344 | 0 | C | T | 43.9% | 34.8 / 21.0 | 42 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 1,222,233 | 0 | G | A | 43.8% | 36.7 / 13.7 | 32 | pseudogene (60/75 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| * | NC_000913 | 1,621,118 | 0 | A | C | 43.8% | 53.7 / 14.1 | 48 | V7G (GTG→GGG) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | NC_000913 | 1,153,573 | 0 | T | G | 43.2% | 49.8 / 20.5 | 37 | Y92D (TAC→GAC) | pabC | 4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| * | NC_000913 | 1,489,174 | 0 | G | T | 42.9% | 51.0 / 12.6 | 35 | G315C (GGT→TGT) | aldA | aldehyde dehydrogenase A, NAD‑linked |
| * | NC_000913 | 3,423,287 | 0 | G | C | 42.9% | 43.7 / 16.5 | 35 | intergenic (+93/+136) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,423,290 | 0 | A | C | 42.9% | 31.3 / 10.9 | 35 | intergenic (+96/+133) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,133,232 | 0 | A | G | 42.9% | 50.3 / 15.5 | 42 | E206G (GAA→GGA) | metF | 5,10‑methylenetetrahydrofolate reductase |
| * | NC_000913 | 436,516 | 0 | C | A | 42.1% | 46.5 / 17.0 | 38 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 907,580 | 0 | T | G | 41.7% | 46.2 / 11.4 | 36 | I235L (ATC→CTC) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 2,248,424 | 0 | C | A | 41.7% | 67.0 / 26.6 | 48 | V37F (GTT→TTT) | lysP | lysine transporter |
| * | NC_000913 | 2,678,043 | 0 | C | T | 41.0% | 46.2 / 14.2 | 39 | E107K (GAA→AAA) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 535,901 | 0 | T | G | 40.7% | 104.6 / 11.9 | 62 | G64G (GGT→GGG) | hyi | hydroxypyruvate isomerase |
| * | NC_000913 | 2,248,431 | 0 | A | C | 40.4% | 60.6 / 16.6 | 52 | G34G (GGT→GGG) | lysP | lysine transporter |
| * | NC_000913 | 3,177,748 | 0 | C | A | 40.0% | 54.8 / 27.5 | 50 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |