mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 222 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 535,920 | 0 | C | T | 71.4% | 129.1 / ‑4.3 | 52 | R71C (CGC→TGC) | hyi | hydroxypyruvate isomerase |
| * | NC_000913 | 599,576 | 0 | T | G | 52.3% | 48.5 / 75.3 | 45 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 357,890 | 0 | C | A | 50.0% | 15.8 / 24.3 | 34 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,998,178 | 0 | G | A | 48.0% | 3.0 / 24.1 | 25 | A66T (GCG→ACG) | uvrD | DNA‑dependent ATPase I and helicase II |
| * | NC_000913 | 1,376,505 | 0 | A | C | 47.7% | 37.2 / 27.6 | 44 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 1,604,237 | 0 | C | T | 47.1% | 41.3 / 24.0 | 51 | S64L (TCG→TTG) | lsrD | autoinducer 2 import system permease protein |
| * | NC_000913 | 3,177,748 | 0 | C | A | 46.5% | 34.0 / 29.0 | 43 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 2,781,645 | 0 | A | C | 46.4% | 77.4 / 12.2 | 56 | V361G (GTT→GGT) | ypjA | adhesin‑like autotransporter |
| * | NC_000913 | 4,604,344 | 0 | C | T | 46.3% | 30.5 / 18.7 | 42 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 3,355,457 | 0 | A | C | 46.2% | 47.7 / 13.0 | 39 | T245P (ACC→CCC) | gltB | glutamate synthase, large subunit |
| * | NC_000913 | 2,480,371 | 0 | T | G | 46.0% | 62.6 / 12.7 | 50 | G390G (GGT→GGG) | dsdA | D‑serine dehydratase |
| * | NC_000913 | 2,480,380 | 0 | A | G | 46.0% | 52.4 / 14.4 | 50 | G393G (GGA→GGG) | dsdA | D‑serine dehydratase |
| * | NC_000913 | 287,172 | 0 | G | C | 45.5% | 32.6 / 15.0 | 33 | P128P (CCG→CCC) | yagH | CP4‑6 prophage; putative xylosidase/arabinosidase |
| * | NC_000913 | 6,964 | 0 | A | C | 45.0% | 59.1 / 11.3 | 40 | G332G (GGT→GGG) | yaaJ | putative transporter |
| * | NC_000913 | 2,903,692 | 0 | C | A | 44.3% | 82.6 / 45.7 | 61 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 73,581 | 0 | A | C | 44.0% | 80.2 / 15.0 | 50 | V314G (GTA→GGA) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease |
| * | NC_000913 | 354,288 | 0 | T | G | 44.0% | 76.4 / 17.3 | 51 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 941,713 | 0 | T | G | 42.9% | 42.9 / 12.0 | 35 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 4,065,598 | 0 | G | A | 42.9% | 56.8 / 21.3 | 50 | L57L (CTG→TTG) | yihO | putative sulphoquinovose importer |
| * | NC_000913 | 646,747 | 0 | T | G | 42.3% | 83.4 / 11.8 | 53 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |