mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 180 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 60.5% | ‑0.4 / 29.4 | 39 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,880 | 0 | T | C | 54.8% | 27.6 / 53.6 | 43 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,875 | 0 | A | T | 50.0% | 34.0 / 22.0 | 45 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,151,589 | 0 | A | T | 48.1% | 50.7 / 32.6 | 56 | L135F (TTA→TTT) | yegJ | uncharacterized protein |
| * | NC_000913 | 2,151,592 | 0 | G | T | 46.4% | 56.8 / 34.9 | 56 | L136F (TTG→TTT) | yegJ | uncharacterized protein |
| * | NC_000913 | 2,096,090 | 0 | A | G | 46.3% | 40.4 / 11.0 | 41 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase, catalytic subunit with HisH |
| * | NC_000913 | 4,332,791 | 0 | A | C | 43.9% | 94.2 / 17.8 | 57 | V161G (GTG→GGG) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| * | NC_000913 | 3,206,435 | 0 | C | T | 43.4% | 43.2 / 29.8 | 53 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 2,151,608 | 0 | G | A | 43.1% | 47.6 / 28.5 | 51 | E142K (GAA→AAA) | yegJ | uncharacterized protein |
| * | NC_000913 | 1,397,830 | 0 | T | C | 41.7% | 69.3 / 18.4 | 61 | I265V (ATT→GTT) | uspE | stress‑induced protein |
| * | NC_000913 | 1,622,816 | 0 | G | A | 41.7% | 34.8 / 42.0 | 48 | intergenic (+75/+144) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 4,604,344 | 0 | C | T | 40.3% | 70.2 / 32.0 | 63 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 357,873 | 0 | C | T | 40.0% | 36.5 / 18.8 | 45 | S273N (AGC→AAC) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,151,581 | 0 | G | T | 40.0% | 77.0 / 20.5 | 56 | D133Y (GAT→TAT) | yegJ | uncharacterized protein |
| * | NC_000913 | 599,576 | 0 | T | G | 39.6% | 86.8 / 10.1 | 56 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 3,556,207 | 0 | T | C | 38.6% | 91.6 / 13.7 | 57 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 3,508,662 | 0 | T | A | 38.3% | 99.1 / 18.0 | 61 | E384D (GAA→GAT) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 802,118 | 0 | A | C | 38.2% | 77.5 / 12.9 | 56 | T78P (ACC→CCC) | ybhI | putative DASS family tricarboxylate or dicarboxylate transporter |
| * | NC_000913 | 2,421,437 | 0 | T | C | 37.7% | 72.1 / 11.7 | 53 | I38T (ATC→ACC) | folX | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| * | NC_000913 | 4,555,109 | 0 | T | A | 37.7% | 79.3 / 15.1 | 54 | N178K (AAT→AAA) | uxuR | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2376811 | 68 (1.020) | 3 (0.050) | 3/290 | 12.6 | 4.3% | coding (9/858 nt) | menB | dihydroxynaphthoic acid synthetase |
| ? | NC_000913 | = 2376825 | 67 (1.040) | intergenic (‑6/+9) | menB/menH | dihydroxynaphthoic acid synthetase/2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase | |||||