mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 635 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,097,433 | 0 | G | C | 57.1% | 13.6 / 51.3 | 35 | intergenic (+604/+132) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| * | NC_000913 | 941,713 | 0 | T | G | 51.7% | 58.8 / 95.5 | 58 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 357,890 | 0 | C | A | 49.0% | 39.2 / 34.1 | 49 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 535,918 | 0 | A | G | 48.2% | 114.4 / 16.2 | 83 | E70G (GAG→GGG) | hyi | hydroxypyruvate isomerase |
| * | NC_000913 | 1,097,400 | 0 | A | G | 46.9% | 48.0 / 11.1 | 50 | intergenic (+571/+165) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| * | NC_000913 | 1,033,102 | 0 | T | C | 46.3% | 83.6 / 24.7 | 67 | S322P (TCC→CCC) | hyaA | hydrogenase 1, small subunit |
| * | NC_000913 | 993,917 | 0 | A | C | 45.9% | 98.0 / 15.0 | 61 | V43G (GTG→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 4,538,109 | 0 | A | C | 44.8% | 107.1 / 17.5 | 67 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 29,496 | 0 | T | A | 43.8% | 85.7 / 35.9 | 64 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 2,248,431 | 0 | A | C | 43.8% | 97.8 / 23.4 | 65 | G34G (GGT→GGG) | lysP | lysine transporter |
| * | NC_000913 | 2,248,437 | 0 | A | C | 43.8% | 96.6 / 20.1 | 65 | G32G (GGT→GGG) | lysP | lysine transporter |
| * | NC_000913 | 3,423,294 | 0 | T | C | 43.3% | 80.9 / 18.8 | 60 | intergenic (+100/+129) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 2,434,861 | 0 | G | T | 43.0% | 118.4 / 48.1 | 86 | P259Q (CCA→CAA) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 1,033,087 | 0 | C | A | 42.6% | 97.9 / 27.2 | 61 | Q317K (CAA→AAA) | hyaA | hydrogenase 1, small subunit |
| * | NC_000913 | 1,397,830 | 0 | T | C | 42.6% | 80.1 / 20.2 | 61 | I265V (ATT→GTT) | uspE | stress‑induced protein |
| * | NC_000913 | 1,621,118 | 0 | A | C | 42.5% | 121.7 / 21.3 | 80 | V7G (GTG→GGG) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | NC_000913 | 3,042,604 | 0 | A | C | 42.2% | 60.2 / 19.5 | 45 | V182G (GTG→GGG) | yqfA | hemolysin III family HylIII inner membrane protein |
| * | NC_000913 | 4,040,762 | 0 | C | G | 42.2% | 78.5 / 21.4 | 45 | intergenic (+126/+144) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| * | NC_000913 | 1,489,174 | 0 | G | T | 41.7% | 98.0 / 23.4 | 60 | G315C (GGT→TGT) | aldA | aldehyde dehydrogenase A, NAD‑linked |
| * | NC_000913 | 2,248,424 | 0 | C | A | 41.7% | 90.4 / 34.5 | 61 | V37F (GTT→TTT) | lysP | lysine transporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 925901 = | 72 (0.900) | 15 (0.190) +C |
11/296 | 10.8 | 20.1% | noncoding (71/88 nt) | serW | tRNA‑Ser |
| ? | NC_000913 | = 1097399 | 48 (0.600) | intergenic (+570/+166) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||