mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 206 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,206,435 | 0 | C | T | 55.3% | 12.2 / 55.4 | 38 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 357,880 | 0 | T | C | 55.0% | 23.3 / 55.6 | 40 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 354,282 | 0 | T | G | 54.4% | 48.4 / 68.9 | 46 | V526G (GTT→GGT) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 523,335 | 0 | T | G | 53.6% | 26.4 / 39.5 | 28 | G25G (GGT→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 2,040,075 | 0 | C | G | 52.9% | 19.5 / 43.6 | 35 | L200V (CTG→GTG) | yedY | membrane‑anchored, periplasmic TMAO, DMSO reductase |
| * | NC_000913 | 357,890 | 0 | C | A | 52.6% | 15.2 / 53.1 | 38 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,875 | 0 | A | T | 51.2% | 34.2 / 70.3 | 41 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,350,844 | 0 | A | C | 47.4% | 51.7 / 12.4 | 38 | L728V (TTA→GTA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 213,341 | 0 | A | G | 47.1% | 33.1 / 10.4 | 34 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 2,950,201 | 0 | T | G | 46.8% | 65.0 / 13.0 | 47 | G320G (GGT→GGG) | argA | amino acid N‑acetyltransferase and inactive acetylglutamate kinase |
| * | NC_000913 | 73,581 | 0 | A | C | 46.5% | 71.1 / 10.2 | 43 | V314G (GTA→GGA) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease |
| * | NC_000913 | 357,873 | 0 | C | T | 46.3% | 26.5 / 25.4 | 41 | S273N (AGC→AAC) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 501,564 | 0 | A | C | 46.0% | 79.2 / 11.7 | 50 | *559E (TAA→GAA) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 354,288 | 0 | T | G | 45.6% | 58.4 / 16.9 | 46 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 2,984,441 | 0 | A | C | 44.2% | 70.2 / 13.9 | 43 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 925,900 | 0 | A | G | 43.4% | 84.7 / 14.8 | 53 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 3,743,657 | 0 | A | C | 43.1% | 77.2 / 16.1 | 51 | T309P (ACC→CCC) | yiaK | 2,3‑diketo‑L‑gulonate reductase, NADH‑dependent |
| * | NC_000913 | 4,604,344 | 0 | C | T | 43.1% | 59.0 / 25.9 | 51 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 3,000,421 | 0 | A | T | 42.9% | 43.4 / 13.6 | 36 | Y26F (TAT→TTT) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |
| * | NC_000913 | 436,516 | 0 | C | A | 42.5% | 63.8 / 23.2 | 48 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |