mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 643 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 5,159 | 0 | G | A | 51.1% | 68.0 / 142.5 | 90 | intergenic (+139/‑75) | thrC/yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| * | NC_000913 | 2,511,772 | 0 | A | C | 50.8% | 74.4 / 99.5 | 59 | V312G (GTG→GGG) | mntH | manganese/divalent cation transporter |
| * | NC_000913 | 1,489,174 | 0 | G | T | 50.0% | 63.4 / 32.8 | 54 | G315C (GGT→TGT) | aldA | aldehyde dehydrogenase A, NAD‑linked |
| * | NC_000913 | 3,206,435 | 0 | C | T | 48.2% | 63.6 / 62.4 | 83 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 941,713 | 0 | T | G | 47.9% | 55.3 / 17.3 | 48 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 2,481,804 | 0 | G | A | 45.6% | 86.0 / 30.3 | 69 | P125S (CCA→TCA) | emrY | putative multidrug efflux system |
| * | NC_000913 | 366,526 | 0 | T | G | 45.3% | 122.7 / 29.8 | 75 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 3,001,164 | 0 | A | C | 45.3% | 108.2 / 13.7 | 65 | T274P (ACC→CCC) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |
| * | NC_000913 | 213,341 | 0 | A | G | 45.2% | 105.6 / 20.2 | 73 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 501,564 | 0 | A | C | 44.4% | 122.0 / 22.5 | 72 | *559E (TAA→GAA) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 501,575 | 0 | A | C | 44.4% | 124.3 / 14.8 | 72 | V555G (GTG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 1,079,468 | 0 | A | G | 43.1% | 106.2 / 15.4 | 65 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 2,984,441 | 0 | A | C | 42.9% | 133.7 / 27.4 | 77 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 3,508,657 | 0 | A | G | 42.9% | 108.5 / 19.4 | 71 | F386S (TTC→TCC) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 2,483,268 | 0 | T | A | 42.7% | 84.3 / 41.9 | 75 | L24F (TTA→TTT) | emrK | multidrug resistance efflux pump membrane fusion protein |
| * | NC_000913 | 2,001,918 | 0 | A | C | 42.4% | 116.5 / 16.5 | 66 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 1,478,324 | 0 | T | G | 42.1% | 136.4 / 17.1 | 76 | G33G (GGT→GGG) | ynbB | putative CDP‑diglyceride synthase |
| * | NC_000913 | 3,508,662 | 0 | T | A | 42.1% | 120.6 / 36.8 | 76 | E384D (GAA→GAT) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 4,457,105 | 0 | A | G | 41.8% | 99.5 / 30.8 | 79 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| * | NC_000913 | 3,717,014 | 0 | T | G | 41.6% | 151.8 / 12.8 | 77 | G156G (GGT→GGG) | yiaD | multicopy suppressor of bamB; outer membrane lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 63 (0.780) | 6 (0.080) | 6/266 | 8.7 | 9.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 55 (0.760) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||