mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 422 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 55.0% | 10.4 / 49.8 | 40 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,376,505 | 0 | A | C | 51.8% | 53.4 / 98.7 | 56 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 357,880 | 0 | T | C | 51.2% | 39.3 / 61.1 | 41 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,875 | 0 | A | T | 50.0% | 42.1 / 26.2 | 43 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,153,573 | 0 | T | G | 48.0% | 42.9 / 43.0 | 50 | Y92D (TAC→GAC) | pabC | 4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| * | NC_000913 | 2,781,645 | 0 | A | C | 44.8% | 110.3 / 15.0 | 68 | V361G (GTT→GGT) | ypjA | adhesin‑like autotransporter |
| * | NC_000913 | 847,444 | 0 | G | T | 44.6% | 72.0 / 34.4 | 56 | I187I (ATC→ATA) | glnH | glutamine transporter subunit |
| * | NC_000913 | 1,822,197 | 0 | A | C | 44.3% | 101.7 / 26.1 | 71 | G20G (GGT→GGG) | osmE | osmotically‑inducible lipoprotein |
| * | NC_000913 | 925,900 | 0 | A | G | 43.5% | 101.2 / 14.4 | 69 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 2,001,911 | 0 | G | A | 42.6% | 62.0 / 28.5 | 54 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 835,937 | 0 | T | G | 42.4% | 106.1 / 11.8 | 61 | G230G (GGT→GGG) | ybiB | putative family 3 glycosyltransferase |
| * | NC_000913 | 3,585,086 | 0 | A | C | 41.6% | 151.3 / 14.2 | 78 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltranspeptidase |
| * | NC_000913 | 2,781,626 | 0 | G | T | 41.3% | 94.6 / 25.6 | 63 | N367K (AAC→AAA) | ypjA | adhesin‑like autotransporter |
| * | NC_000913 | 993,917 | 0 | A | C | 41.2% | 91.0 / 10.3 | 52 | V43G (GTG→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 4,111,747 | 0 | G | T | 41.1% | 89.3 / 25.8 | 56 | N156K (AAC→AAA) | yiiQ | DUF1454 family putative periplasmic protein |
| * | NC_000913 | 1,506,035 | 0 | G | A | 40.4% | 44.5 / 23.9 | 47 | L16L (CTG→TTG) | ydcO | BenE family inner membrane putative transporter |
| * | NC_000913 | 1,510,395 | 0 | C | A | 40.0% | 89.8 / 32.8 | 56 | S131R (AGC→AGA) | ydcR | putative DNA‑binding transcriptional regulator and putative aminotransferase |
| * | NC_000913 | 298,960 | 0 | A | C | 39.7% | 115.6 / 25.6 | 63 | Y659D (TAT→GAT) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 1,506,020 | 0 | C | A | 39.6% | 72.8 / 21.6 | 48 | G21C (GGC→TGC) | ydcO | BenE family inner membrane putative transporter |
| * | NC_000913 | 2,678,039 | 0 | T | G | 39.0% | 113.2 / 10.9 | 61 | N108T (AAC→ACC) | yphE | putative sugar ABC transporter ATPase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1411899 = | 60 (0.850) | 5 (0.090) | 5/246 | 10.4 | 8.4% | coding (50/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | = 1434958 | 60 (1.030) | pseudogene (51/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related | |||||