mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 326 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 47.6% | 27.7 / 23.5 | 42 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 29,496 | 0 | T | A | 46.6% | 87.5 / 45.4 | 73 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 1,356,201 | 0 | T | G | 46.4% | 84.0 / 12.8 | 56 | T304P (ACC→CCC) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| * | NC_000913 | 357,875 | 0 | A | T | 46.3% | 40.4 / 17.1 | 41 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,206,435 | 0 | C | T | 44.2% | 66.6 / 52.3 | 77 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,443,277 | 0 | A | C | 42.4% | 116.4 / 18.6 | 67 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 3,133,302 | 0 | T | G | 42.4% | 96.8 / 13.6 | 59 | H219P (CAC→CCC) | yghS | putative ATP‑binding protein |
| * | NC_000913 | 2,984,441 | 0 | A | C | 42.3% | 95.1 / 13.4 | 52 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 1,825,061 | 0 | G | A | 42.2% | 96.2 / 35.0 | 71 | intergenic (‑124/+79) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 40,515 | 0 | G | T | 42.0% | 58.8 / 33.8 | 69 | Q473K (CAA→AAA) | caiT | putative transporter |
| * | NC_000913 | 175,694 | 0 | T | G | 41.7% | 95.1 / 14.3 | 60 | G196G (GGT→GGG) | clcA | H(+)/Cl(‑) exchange transporter |
| * | NC_000913 | 357,880 | 0 | T | C | 41.5% | 48.9 / 13.1 | 41 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 29,486 | 0 | C | A | 40.8% | 121.4 / 43.0 | 71 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 4,346,675 | 0 | T | G | 40.7% | 98.5 / 16.3 | 59 | T218P (ACC→CCC) | fumB | anaerobic class I fumarate hydratase (fumarase B) |
| * | NC_000913 | 1,174,610 | 0 | A | C | 40.5% | 128.1 / 19.9 | 75 | W186G (TGG→GGG) | ycfT | inner membrane protein |
| * | NC_000913 | 2,252,657 | 0 | C | T | 40.4% | 60.7 / 24.9 | 52 | L320F (CTT→TTT) | yeiI | putative kinase |
| * | NC_000913 | 599,576 | 0 | T | G | 40.4% | 84.9 / 24.3 | 58 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 993,917 | 0 | A | C | 40.4% | 92.1 / 16.3 | 57 | V43G (GTG→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 1,097,581 | 0 | A | G | 40.0% | 80.8 / 16.3 | 50 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 3,001,164 | 0 | A | C | 40.0% | 89.1 / 10.8 | 52 | T274P (ACC→CCC) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |