mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 389 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 266,349 | 0 | C | A | 56.0% | 30.4 / 84.4 | 50 | V69F (GTT→TTT) | yafY | lipoprotein, inner membrane; degP regulator; CP4‑6 prophage |
| * | NC_000913 | 3,001,164 | 0 | A | C | 48.8% | 46.3 / 23.0 | 43 | T274P (ACC→CCC) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |
| * | NC_000913 | 1,825,061 | 0 | G | A | 48.4% | 61.6 / 49.1 | 64 | intergenic (‑124/+79) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 3,001,170 | 0 | A | C | 47.7% | 53.3 / 11.7 | 45 | T276P (ACC→CCC) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |
| * | NC_000913 | 2,984,441 | 0 | A | C | 46.8% | 72.1 / 11.4 | 47 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 266,358 | 0 | T | G | 46.0% | 59.9 / 13.0 | 51 | T66P (ACC→CCC) | yafY | lipoprotein, inner membrane; degP regulator; CP4‑6 prophage |
| * | NC_000913 | 2,252,646 | 0 | T | G | 45.3% | 84.3 / 11.1 | 54 | V316G (GTA→GGA) | yeiI | putative kinase |
| * | NC_000913 | 3,443,277 | 0 | A | C | 45.2% | 100.7 / 20.0 | 62 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 1,413,735 | 0 | A | T | 44.4% | 56.8 / 28.4 | 45 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 1,764,785 | 0 | T | A | 44.0% | 60.3 / 27.1 | 51 | intergenic (‑399/+149) | sufA/ydiH | Fe‑S cluster assembly protein/uncharacterized protein |
| * | NC_000913 | 599,576 | 0 | T | G | 43.3% | 90.2 / 29.5 | 61 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 941,713 | 0 | T | G | 43.1% | 77.9 / 15.4 | 51 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 2,252,660 | 0 | G | T | 43.1% | 106.5 / 29.6 | 58 | E321* (GAA→TAA) | yeiI | putative kinase |
| * | NC_000913 | 2,903,692 | 0 | C | A | 43.1% | 85.0 / 44.2 | 58 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 231,694 | 0 | C | T | 42.2% | 60.6 / 17.2 | 46 | F191F (TTC→TTT) | yafD | endo/exonuclease/phosphatase family protein |
| * | NC_000913 | 364,526 | 0 | C | A | 41.9% | 61.5 / 20.8 | 43 | G594C (GGC→TGC) | lacZ | beta‑D‑galactosidase |
| * | NC_000913 | 3,556,207 | 0 | T | C | 41.5% | 105.7 / 18.4 | 65 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 1,604,237 | 0 | C | T | 41.5% | 64.8 / 22.5 | 53 | S64L (TCG→TTG) | lsrD | autoinducer 2 import system permease protein |
| * | NC_000913 | 650,464 | 0 | A | T | 41.4% | 80.3 / 25.6 | 58 | R9R (CGT→CGA) | citE | citrate lyase, citryl‑ACP lyase (beta) subunit |
| * | NC_000913 | 4,538,109 | 0 | A | C | 41.3% | 115.0 / 14.8 | 65 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1262863 | 62 (0.980) | 3 (0.050) | 3/286 | 11.9 | 4.7% | coding (15/852 nt) | ispE | 4‑diphosphocytidyl‑2‑C‑methylerythritol kinase |
| ? | NC_000913 | 1601706 = | 63 (1.040) | coding (217/1536 nt) | lsrA | autoinducer 2 import ATP‑binding protein | |||||