mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 151 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,918 | 0 | A | C | 61.9% | 31.2 / 53.9 | 44 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 3,515,565 | 0 | A | G | 59.7% | 38.6 / 99.6 | 77 | Y117H (TAC→CAC) | dam | DNA adenine methyltransferase |
| * | NC_000913 | 3,720 | 0 | T | G | 55.6% | 27.8 / 41.9 | 28 | V307G (GTA→GGA) | thrB | homoserine kinase |
| * | NC_000913 | 2,434,882 | 0 | T | G | 54.5% | 35.4 / 53.8 | 33 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 3,698,874 | 0 | A | G | 52.9% | 8.2 / 103.9 | 68 | K221E (AAA→GAA) | bcsG | DUF3260 family cellulose production inner membrane protein |
| * | NC_000913 | 3,651,916 | 0 | C | T | 52.7% | 25.0 / 104.0 | 74 | pseudogene (626/741 nt) | yhiS | pseudogene |
| * | NC_000913 | 2,001,911 | 0 | G | A | 52.2% | 20.9 / 56.4 | 46 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 941,713 | 0 | T | G | 51.6% | 30.5 / 50.8 | 31 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 3,840,646 | 0 | T | C | 51.5% | 12.5 / 38.4 | 33 | D365G (GAT→GGT) | nepI | putative transporter |
| * | NC_000913 | 328,807 | 0 | A | T | 50.0% | 16.6 / 17.8 | 28 | D176E (GAT→GAA) | betI | choline‑inducible betIBA‑betT divergent operon transcriptional repressor |
| * | NC_000913 | 2,421,443 | 0 | A | C | 50.0% | 39.0 / 16.0 | 38 | Y40S (TAC→TCC) | folX | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| * | NC_000913 | 3,270,455 | 0 | G | T | 50.0% | 22.8 / 13.0 | 26 | intergenic (+853/+170) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| * | NC_000913 | 3,646,196 | 0 | A | G | 48.8% | 18.5 / 123.7 | 84 | H271R (CAC→CGC) | rlmJ | 23S rRNA m(6)A2030 methyltransferase, SAM‑dependent |
| * | NC_000913 | 70,434 | 0 | C | T | 48.6% | ‑6.5 / 115.9 | 72 | N16N (AAC→AAT) | araC | ara regulon transcriptional activator; autorepressor |
| * | NC_000913 | 4,604,344 | 0 | C | T | 48.1% | 15.5 / 13.2 | 28 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 40,515 | 0 | G | T | 47.9% | 62.0 / 24.1 | 48 | Q473K (CAA→AAA) | caiT | putative transporter |
| * | NC_000913 | 2,386,862 | 0 | G | A | 46.9% | 21.3 / 24.5 | 32 | intergenic (+31/‑72) | yfbL/yfbM | putative M28A family peptidase/DUF1877 family protein |
| * | NC_000913 | 3,638,911 | 0 | A | G | 45.9% | 16.9 / 82.0 | 61 | M424V (ATG→GTG) | pitA | phosphate transporter, low‑affinity; tellurite importer |
| * | NC_000913 | 17,000 | 0 | C | T | 45.5% | 37.2 / 20.6 | 44 | intergenic (‑40/‑489) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/sodium‑proton antiporter |
| * | NC_000913 | 1,535,785 | 0 | A | G | 45.2% | 52.4 / 14.1 | 42 | F25S (TTC→TCC) | yddE | PhzC‑PhzF family protein |