mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 34,876 | A→G | C166R (TGT→CGT) | caiE ← | stimulator of CaiD and CaiB enzyme activities |
| RA | 44,310 | A→G | N44S (AAC→AGC) | fixC → | putative oxidoreductase |
| RA | 73,145 | T→C | K459K (AAA→AAG) | thiP ← | thiamine/thiamine pyrophosphate ABC transporter permease |
| RA | 95,768 | A→G | V373V (GTA→GTG) | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
| RA | 96,645 | T→C | V215A (GTG→GCG) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide transferase |
| RA | 143,721 | T→C | V7A (GTG→GCG) | yadH → | putative ABC transporter permease |
| RA | 218,942 | A→G | V218A (GTT→GCT) | tsaA ← | tRNA‑Thr(GGU) m(6)t(6)A37 methyltransferase, SAM‑dependent |
| RA | 231,803 | C→T | P228S (CCG→TCG) | yafD → | endo/exonuclease/phosphatase family protein |
| RA | 246,784 | G→A | A25T (GCC→ACC) | yafL → | putative lipoprotein and C40 family peptidase |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| RA | 261,402 | G→A | A339T (GCC→ACC) | proB → | gamma‑glutamate kinase |
| RA | 277,958 | A→G | L282P (CTC→CCC) | afuC ← | CP4‑6 prophage; putative ferric transporter subunit |
| RA | 277,996 | A→G | G269G (GGT→GGC) | afuC ← | CP4‑6 prophage; putative ferric transporter subunit |
| RA | 280,171 | G→A | pseudogene (192/249 nt) | insX ← | pseudogene, IS3 family transposase family |
| RA | 285,648 | C→G | A85G (GCC→GGC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 295,230 | G→A | T117M (ACG→ATG) | yagN ← | CP4‑6 prophage; uncharacterized protein |
| RA | 313,726 | A→G | pseudogene (80/90 nt) | ykgP ← | pseudogene, oxidoreductase family |
| RA | 320,494 | G→A | G90S (GGC→AGC) | rclR → | reactive chlorine species (RCS)‑specific activator of the rcl genes |
| RA | 380,022 | (G)10→9 | intergenic (‑141/+47) | frmR ← / ← yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| RA | 456,412 | T→C | L427P (CTG→CCG) | tig → | peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 483,580 | T→C | Y275C (TAC→TGC) | acrB ← | multidrug efflux system protein |
| RA | 483,985 | A→G | V140A (GTC→GCC) | acrB ← | multidrug efflux system protein |
| RA | 515,571 | A→G | I68T (ATC→ACC) | qmcA ← | PHB domain membrane‑anchored putative protease |
| RA | 535,299 | T→C | F462L (TTC→CTC) | gcl → | glyoxylate carboligase |
| RA | 577,085 | G→A | intergenic (‑260/‑313) | nmpC ← / → essD | DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage/DLP12 prophage; putative phage lysis protein |
| RA | 578,102 | C→T | Q164* (CAA→TAA) | rrrD → | DLP12 prophage; putative lysozyme |
| RA | 586,073 | C→T | pseudogene (17/45 nt) | pauD → | tRNA‑OTHER |
| RA | 598,492 | A→G | E338E (GAA→GAG) | cusB → | copper/silver efflux system, membrane fusion protein |
| RA | 628,546 | A→G | K285E (AAA→GAA) | entB → | isochorismatase |
| RA | 642,536 | A→G | N150S (AAT→AGT) | ybdR → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 694,122 | G→A | G278G (GGC→GGT) | miaB ← | tRNA‑i(6)A37 methylthiotransferase |
| RA | 701,574 | A→G | A7A (GCT→GCC) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 706,673 | T→C | I194T (ATT→ACT) | glnS → | glutamyl‑tRNA synthetase |
| RA | 723,576 | A→G | V280A (GTC→GCC) | kdpD ← | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| RA | 733,011 | T→C | I1143I (ATT→ATC) | rhsC → | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 741,429 | A→G | S376S (TCT→TCC) | dtpD ← | dipeptide and tripeptide permease D |
| RA | 747,436 | T→C | T112A (ACC→GCC) | abrB ← | regulator of aidB expression; inner membrane protein |
| RA | 771,344 | T→C | intergenic (+733/‑114) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 772,049 | T→C | F198L (TTC→CTC) | cydA → | cytochrome d terminal oxidase, subunit I |
| RA | 781,084 | T→C | noncoding (17/76 nt) | valZ → | tRNA‑Val |
| RA | 785,828 | C→T | P66S (CCT→TCT) | aroG → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible |
| RA | 797,155 | T→C | V201A (GTA→GCA) | modC → | molybdate ABC transporter ATPase; chlorate resistance protein |
| RA | 807,115 | T→C | Q56R (CAA→CGA) | ybhC ← | acyl‑CoA thioesterase, lipoprotein |
| RA | 868,415 | C→T | A299V (GCC→GTC) | gsiA → | glutathione ABC transporter ATPase |
| RA | 929,067 | G→A | L43L (CTC→CTT) | cydC ← | glutathione/cysteine ABC transporter export permease/ATPase |
| JC JC | 944,912 | Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp | intergenic (+16/+14) | dmsC → / ← ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/putative isochorismatase family hydrolase |
| RA | 953,731 | T→C | T246A (ACC→GCC) | focA ← | formate channel |
| RA | 964,634 | T→C | R105R (CGT→CGC) | ycaI → | ComEC family inner membrane protein |
| RA | 980,655 | A→G | T1444A (ACC→GCC) | mukB → | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| RA | 1,029,884 | C→T | R29H (CGC→CAC) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent |
| RA | 1,033,049 | A→G | D304G (GAT→GGT) | hyaA → | hydrogenase 1, small subunit |
| RA | 1,053,097 | A→G | V89A (GTA→GCA) | yccM ← | putative 4Fe‑4S membrane protein |
| RA | 1,124,614 | A→G | V238A (GTG→GCG) | mdtH ← | multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin |
| RA | 1,148,579 | C→T | A320V (GCA→GTA) | plsX → | putative phosphate acyltransferase |
| RA | 1,154,782 | A→G | E224G (GAA→GGA) | yceG → | septation protein, ampicillin sensitivity |
| RA | 1,158,225 | C→T | L119L (CTC→CTT) | ptsG → | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,169,759 | C→T | D206N (GAT→AAT) | ldtC ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 1,197,576 | T→C | D221G (GAC→GGC) | ymfE ← | e14 prophage; putative inner membrane protein |
| RA | 1,205,497 | T→C | pseudogene (1094/1134 nt) | aaaE → | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| RA | 1,246,015 | T→C | A454A (GCA→GCG) | treA ← | periplasmic trehalase |
| RA | 1,314,744 | T→C | T161A (ACT→GCT) | yciE ← | putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,321,083 | G→A | A101V (GCG→GTG) | trpD ← | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| RA | 1,345,482 | G→A | Q421* (CAG→TAG) | gmr ← | cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of RNase II stability |
| RA | 1,370,155 | A→G | intergenic (+152/‑61) | pspE → / → ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| RA | 1,392,718 | A→G | Y243C (TAT→TGT) | pgrR → | murein peptide degradation regulator |
| RA | 1,405,326 | A→G | T196A (ACA→GCA) | abgR → | putative DNA‑binding transcriptional regulator of abgABT operon |
| RA | 1,423,878 | T→C | F33L (TTT→CTT) | trkG → | Rac prophage; potassium transporter subunit |
| RA | 1,436,536 | A→G | Y120H (TAC→CAC) | ompN ← | outer membrane pore protein N, non‑specific |
| RA | 1,565,033 | A→G | V234A (GTG→GCG) | dosP ← | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator |
| RA | 1,644,942 | C→T | intergenic (‑40/+177) | rem ← / ← hokD | Qin prophage; uncharacterized protein/Qin prophage; small toxic polypeptide |
| RA | 1,648,553 | G→A | V16M (GTG→ATG) | ydfA → | Qin prophage; uncharacterized protein |
| RA | 1,674,770 | T→C | R286R (CGT→CGC) | tqsA → | pheromone AI‑2 transporter |
| RA | 1,696,861 | T→C | L64L (TTA→TTG) | uidR ← | transcriptional repressor |
| RA | 1,772,863 | C→T | L118L (CTG→TTG) | ydiN → | putative MFS transporter, membrane protein |
| RA | 1,823,902 | T→C | Y130H (TAT→CAT) | cho → | endonuclease of nucleotide excision repair |
| RA | 1,863,313 | T→C | A181A (GCT→GCC) | gapA → | glyceraldehyde‑3‑phosphate dehydrogenase A |
| RA | 1,878,732 | Δ2 bp | coding (1018‑1019/1026 nt) | yeaP → | diguanylate cyclase |
| RA | 1,883,282 | T→C | L32P (CTC→CCC) | yeaV → | putative transporter |
| RA | 1,923,990 | A→G | V201A (GTA→GCA) | yebZ ← | inner membrane protein |
| RA | 1,954,771 | A→G | V746A (GTG→GCG) | torZ ← | trimethylamine N‑oxide reductase system III, catalytic subunit |
| RA | 1,955,440 | T→C | Q523R (CAG→CGG) | torZ ← | trimethylamine N‑oxide reductase system III, catalytic subunit |
| RA | 1,966,120 | C→T | G24G (GGG→GGA) | flhB ← | flagellin export apparatus, substrate specificity protein |
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| RA | 2,000,046 | G→A | R114C (CGC→TGC) | fliY ← | cystine transporter subunit |
| RA | 2,029,338 | G→A | T10M (ACG→ATG) | yedI ← | DUF808 family inner membrane protein |
| RA | 2,040,356 | T→C | A293A (GCT→GCC) | yedY → | membrane‑anchored, periplasmic TMAO, DMSO reductase |
| RA | 2,049,101 | T→C | G1388G (GGT→GGC) | yeeJ → | putative adhesin |
| RA | 2,098,260 | G→A | D14D (GAC→GAT) | wzzB ← | regulator of length of O‑antigen component of lipopolysaccharide chains |
| RA | 2,117,002 | T→C | T42T (ACA→ACG) | wcaL ← | putative glycosyl transferase |
| RA | 2,139,654 | A→G | intergenic (+169/+105) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,224,908 | C→T | intergenic (‑38/+136) | pbpG ← / ← yohC | D‑alanyl‑D‑alanine endopeptidase/Yip1 family inner membrane protein |
| RA | 2,227,340 | (C)6→7 | pseudogene (1270/1287 nt) | mdtQ ← | pseudogene; putative channel/filament proteins |
| RA | 2,228,525 | G→A | pseudogene (85/1287 nt) | mdtQ ← | pseudogene; putative channel/filament proteins |
| RA | 2,241,409 | T→C | Q87R (CAG→CGG) | galS ← | galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
| RA | 2,254,920 | G→A | G89G (GGC→GGT) | rihB ← | ribonucleoside hydrolase 2 |
| RA | 2,258,247 | A→G | F41L (TTC→CTC) | psuG ← | pseudouridine 5'‑phosphate glycosidase |
| RA | 2,358,589 | A→G | V86A (GTC→GCC) | rhmA ← | 2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| RA | 2,429,065 | A→G | Y392H (TAC→CAC) | purF ← | amidophosphoribosyltransferase |
| RA | 2,441,814 | T→C | G17G (GGT→GGC) | mnmC → | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,442,524 | C→T | A254V (GCG→GTG) | mnmC → | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,449,635 | (C)5→6 | coding (415/822 nt) | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,467,446 | A→G | K301R (AAG→AGG) | intS → | CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase |
| RA | 2,517,257 | A→G | S192S (AGT→AGC) | yfeA ← | putative diguanylate cyclase |
| RA | 2,534,187 | A→G | E41G (GAA→GGA) | ptsI → | PEP‑protein phosphotransferase of PTS system (enzyme I) |
| RA | 2,609,458 | T→C | R324R (CGT→CGC) | hyfG → | hydrogenase 4, subunit |
| RA | 2,611,725 | A→G | H90R (CAC→CGC) | hyfJ → | putative processing element hydrogenase 4 |
| MC JC | 2,636,790 | (TTC)3→2 | coding (565‑567/1473 nt) | der ← | GTPase; multicopy suppressor of ftsJ |
| RA | 2,647,150 | G→A | A59V (GCT→GTT) | pbpC ← | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein |
| RA | 2,662,523 | A→G | intergenic (‑392/+60) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 2,767,140 | T→C | L53L (TTG→CTG) | rnlB → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,780,330 | G→A | G799G (GGC→GGT) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,803,836 | T→C | L112P (CTA→CCA) | nrdF → | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like protein |
| RA | 2,857,878 | T→C | R262R (CGT→CGC) | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,912,885 | A→G | I256T (ATC→ACC) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| RA | 2,960,844 | T→C | T529A (ACG→GCG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,978,727 | T→C | N58S (AAT→AGT) | lysA ← | diaminopimelate decarboxylase, PLP‑binding |
| RA | 2,994,896 | G→C | pseudogene (197/633 nt) | ygeK ← | pseudogene, response regulator family, part of T3SS PAI ETT2 remnant; putative 2‑component transcriptional regulator |
| RA | 3,012,261 | T→C | G267G (GGT→GGC) | yqeA → | putative amino acid kinase |
| RA | 3,018,435 | A→G | E792E (GAA→GAG) | ygfK → | putative Fe‑S subunit oxidoreductase subunit |
| RA | 3,086,618 | A→G | intergenic (+216/‑88) | yqgC → / → metK | uncharacterized protein/S‑adenosylmethionine synthetase |
| RA | 3,089,398 | T→C | V372A (GTA→GCA) | galP → | D‑galactose transporter |
| RA | 3,106,035 | C→T | P108S (CCA→TCA) | nupG → | nucleoside transporter |
| RA | 3,272,271 | Δ1 bp | coding (481/885 nt) | garR ← | tartronate semialdehyde reductase |
| RA | 3,297,933 | T→C | Y69C (TAC→TGC) | yraQ ← | putative inner membrane permease |
| RA | 3,314,066 | G→A | A650V (GCG→GTG) | infB ← | translation initiation factor IF‑2 |
| RA | 3,319,794 | T→C | R386R (CGT→CGC) | argG → | argininosuccinate synthetase |
| RA | 3,376,403 | T→C | D125G (GAC→GGC) | sspB ← | ClpXP protease specificity enhancing factor |
| RA | 3,377,215 | A→G | L69P (CTG→CCG) | sspA ← | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| RA | 3,405,012 | A→G | pseudogene (281/300 nt) | yrdE → | pseudogene, yedZ paralog |
| RA | 3,411,884 | A→G | K78E (AAG→GAG) | yhdJ → | DNA adenine methyltransferase, SAM‑dependent |
| RA | 3,436,036 | A→G | D277G (GAT→GGT) | rsmB → | 16S rRNA m(5)C967 methyltransferase, SAM‑dependent |
| RA | 3,440,116 | T→C | D305G (GAC→GGC) | rpoA ← | RNA polymerase, alpha subunit |
| RA | 3,449,100 | T→C | T24A (ACG→GCG) | rplP ← | 50S ribosomal subunit protein L16 |
| RA | 3,453,207 | T→C | T22A (ACC→GCC) | rpsJ ← | 30S ribosomal subunit protein S10 |
| RA | 3,507,100 | T→C | L79L (TTA→TTG) | yhfT ← | inner membrane protein |
| RA | 3,537,161 | A→G | Y117C (TAC→TGC) | greB → | transcript cleavage factor |
| RA | 3,540,736 | A→G | E110E (GAA→GAG) | feoB → | ferrous iron transporter protein B and GTP‑binding protein; membrane protein |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,594,432 | A→G | V350A (GTG→GCG) | livM ← | branched‑chain amino acid ABC transporter permease |
| RA | 3,602,371 | C→T | G126E (GGG→GAG) | ftsE ← | cell division ATP‑binding protein |
| RA | 3,612,540 | T→C | W226R (TGG→CGG) | yhhT → | UPF0118 family putative transporter |
| RA | 3,707,870 | T→C | intergenic (‑165/+746) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,773,041 | (G)6→7 | coding (761/1914 nt) | mtlA → | mannitol‑specific PTS enzyme: IIA, IIB and IIC components |
| RA | 3,815,808 | (A)8→7 | intergenic (‑40/+26) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,844,470 | A→G | E169E (GAA→GAG) | adeD → | cryptic adenine deaminase |
| RA | 3,882,798 | T→C | D311G (GAC→GGC) | dnaA ← | chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator |
| RA | 3,891,768 | G→A | A52T (GCA→ACA) | mdtL → | multidrug efflux system protein |
| RA | 4,003,303 | A→G | R292R (CGT→CGC) | rarD ← | putative chloramphenical resistance permease |
| RA | 4,005,381 | A→G | S174G (AGC→GGC) | pldA → | outer membrane phospholipase A |
| RA | 4,078,459 | T→C | intergenic (+21/‑838) | yiiD → / → yiiE | GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator |
| RA | 4,128,316 | A→G | V27A (GTT→GCT) | metJ ← | transcriptional repressor, S‑adenosylmethionine‑binding |
| RA | 4,185,098 | A→G | Y1285C (TAC→TGC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,194,755 | C→T | E449K (GAG→AAG) | thiC ← | phosphomethylpyrimidine synthase |
| RA | 4,229,213 | C→T | L495L (CTG→TTG) | yjbB → | putative Na+/Pi‑cotransporter |
| RA | 4,264,246 | G→A | intergenic (‑15/‑68) | qorA ← / → dnaB | quinone oxidoreductase, NADPH‑dependent/replicative DNA helicase |
| JC | 4,284,437 | (CCA)4→3 | coding (464‑466/1650 nt) | actP ← | acetate transporter |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,342,193 | A→G | T95A (ACG→GCG) | melA → | alpha‑galactosidase, NAD(P)‑binding |
| RA | 4,366,223 | A→G | F184S (TTC→TCC) | dcuA ← | C4‑dicarboxylate antiporter |
| RA | 4,399,151 | Δ1 bp | coding (1740/1848 nt) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,428,122 | A→G | L199P (CTG→CCG) | ytfB ← | OapA family protein |
| RA | 4,443,964 | A→G | D528G (GAT→GGT) | tamA → | translocation and assembly module for autotransporter export, outer membrane subunit |
| RA | 4,465,700 | A→G | W161R (TGG→CGG) | treB ← | trehalose‑specific PTS enzyme: IIB and IIC component |
| RA | 4,497,958 | C→T | intergenic (+18/‑314) | intB → / → insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| RA | 4,514,229 | T→C | E27G (GAA→GGA) | fecB ← | ferric citrate ABC transporter periplasmic binding protein |
| RA | 4,567,548 | A→G | G324G (GGT→GGC) | mdtM ← | multidrug efflux system protein |
| RA | 4,613,359 | C→T | P317S (CCA→TCA) | yjjU → | putative patatin‑like family phospholipase |
| RA | 4,615,100 | A→G | C148C (TGT→TGC) | yjjW ← | putative pyruvate formate lyase activating enzyme |
| RA | 4,631,960 | C→T | P410S (CCG→TCG) | slt → | lytic murein transglycosylase, soluble |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423766–3424234 | 3424563–3424238 | 5–798 | 15 [13] | [14] 15 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 4 (0.100) | 23 (0.640) | 23/266 | 0.9 | 79.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 8 (0.220) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 4 (0.100) | 29 (0.810) | 29/266 | 0.4 | 83.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 8 (0.220) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 42 (1.070) | 40/290 | 0.1 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3515076 = | 43 (1.070) | 28 (0.730) +AAGCTTG |
27/284 | 0.7 | 52.6% | intergenic (‑17/+1) | rpe/dam | D‑ribulose‑5‑phosphate 3‑epimerase/DNA adenine methyltransferase |
| ? | NC_000913 | 4171556 = | 10 (0.250) | intergenic (+12/‑81) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||