mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 88 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,097,480 | 0 | A | G | 68.4% | 12.3 / 10.5 | 19 | intergenic (+651/+85) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| * | NC_000913 | 1,003,633 | 0 | C | . | 66.7% | 47.3 / 62.7 | 39 | coding (195/516 nt) | ycbV | putative fimbrial‑like adhesin protein |
| * | NC_000913 | 2,984,441 | 0 | A | C | 56.7% | 23.7 / 41.8 | 30 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 541,284 | 0 | A | G | 55.6% | 14.0 / 34.4 | 27 | G240G (GGA→GGG) | ybbY | putative uracil/xanthine transporter |
| * | NC_000913 | 1,604,237 | 0 | C | T | 52.9% | 9.9 / 35.0 | 34 | S64L (TCG→TTG) | lsrD | autoinducer 2 import system permease protein |
| * | NC_000913 | 3,350,844 | 0 | A | C | 52.3% | 54.1 / 70.2 | 44 | L728V (TTA→GTA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 4,331,988 | 0 | C | G | 51.3% | 0.3 / 70.4 | 37 | P496R (CCG→CGG) | proP | proline/glycine betaine transporter |
| * | NC_000913 | 213,341 | 0 | A | G | 50.0% | 36.6 / 14.6 | 38 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 4,112,578 | 0 | T | G | 48.1% | 23.4 / 12.4 | 28 | G88G (GGT→GGG) | yiiR | DUF805 family putative inner membrane protein |
| * | NC_000913 | 1,576,077 | 0 | C | A | 47.1% | 52.3 / 20.1 | 34 | D515Y (GAT→TAT) | yddB | putative TonB‑dependent outer membrane receptor |
| * | NC_000913 | 3,745,509 | 0 | A | T | 46.9% | 21.3 / 18.8 | 33 | T236S (ACC→TCC) | yiaN | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| * | NC_000913 | 1,478,324 | 0 | T | G | 46.7% | 50.6 / 23.9 | 45 | G33G (GGT→GGG) | ynbB | putative CDP‑diglyceride synthase |
| * | NC_000913 | 541,275 | 0 | G | T | 46.4% | 33.0 / 10.7 | 28 | L237F (TTG→TTT) | ybbY | putative uracil/xanthine transporter |
| * | NC_000913 | 501,575 | 0 | A | C | 45.5% | 67.6 / 10.3 | 44 | V555G (GTG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 1,478,311 | 0 | A | G | 45.2% | 38.8 / 21.5 | 44 | E29G (GAG→GGG) | ynbB | putative CDP‑diglyceride synthase |
| * | NC_000913 | 987,501 | 0 | T | A | 45.2% | 33.4 / 13.4 | 31 | intergenic (‑519/+84) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 1,825,056 | 0 | G | A | 44.7% | 41.9 / 17.2 | 38 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 4,111,747 | 0 | G | T | 44.7% | 48.3 / 18.3 | 38 | N156K (AAC→AAA) | yiiQ | DUF1454 family putative periplasmic protein |
| * | NC_000913 | 1,159,837 | 0 | A | G | 44.4% | 42.5 / 13.3 | 36 | I572T (ATC→ACC) | fhuE | ferric‑rhodotorulic acid outer membrane transporter |
| * | NC_000913 | 987,524 | 0 | G | A | 44.1% | 34.2 / 17.0 | 34 | intergenic (‑542/+61) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |