mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 54 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,875 | 0 | A | T | 55.6% | 6.4 / 20.0 | 18 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,880 | 0 | T | C | 55.6% | 7.4 / 18.0 | 18 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 523,335 | 0 | T | G | 53.1% | 33.8 / 46.3 | 32 | G25G (GGT→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 941,713 | 0 | T | G | 52.9% | 33.0 / 51.6 | 35 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 689,514 | 0 | A | C | 52.4% | 17.9 / 25.1 | 21 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| * | NC_000913 | 4,111,747 | 0 | G | T | 52.0% | 26.7 / 40.4 | 25 | N156K (AAC→AAA) | yiiQ | DUF1454 family putative periplasmic protein |
| * | NC_000913 | 2,921,177 | 0 | A | C | 51.8% | 33.9 / 42.7 | 27 | G308G (GGT→GGG) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 3,177,748 | 0 | C | A | 51.7% | 20.5 / 44.6 | 29 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 802,118 | 0 | A | C | 51.6% | 32.9 / 42.3 | 31 | T78P (ACC→CCC) | ybhI | putative DASS family tricarboxylate or dicarboxylate transporter |
| * | NC_000913 | 3,350,853 | 0 | A | C | 51.5% | 36.5 / 48.9 | 33 | S725A (TCA→GCA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 2,001,918 | 0 | A | C | 51.2% | 60.5 / 71.6 | 43 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 4,604,344 | 0 | C | T | 48.0% | 9.4 / 13.8 | 25 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 4,336,901 | 0 | T | A | 47.6% | 12.8 / 10.8 | 21 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 1,376,505 | 0 | A | C | 47.5% | 49.3 / 11.9 | 40 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 2,347,169 | 0 | G | A | 43.3% | 13.0 / 97.0 | 67 | intergenic (+19/‑215) | nrdA/nrdB | ribonucleoside‑diphosphate reductase 1, alpha subunit/ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein |
| * | NC_000913 | 3,492,028 | 0 | C | T | 42.9% | 43.0 / 16.7 | 37 | Q90Q (CAG→CAA) | ppiA | peptidyl‑prolyl cis‑trans isomerase A (rotamase A) |
| * | NC_000913 | 2,001,911 | 0 | G | A | 42.2% | 46.4 / 19.6 | 45 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 115,797 | 0 | C | A | 41.9% | 33.8 / 10.2 | 31 | E435* (GAA→TAA) | hofB | T2SE secretion family protein; P‑loop ATPase superfamily protein |
| * | NC_000913 | 266,358 | 0 | T | G | 41.7% | 55.1 / 10.0 | 36 | T66P (ACC→CCC) | yafY | lipoprotein, inner membrane; degP regulator; CP4‑6 prophage |
| * | NC_000913 | 3,508,662 | 0 | T | A | 41.7% | 57.4 / 10.5 | 37 | E384D (GAA→GAT) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |