Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP006584	1,446,672	Δ2,957 bp		[zntB]–[LY180_06850]	[zntB], LY180_06845, [LY180_06850]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP006584	1446672	1449628	2957	23 [0]	[0] 23	[zntB]–[LY180_06850]	[zntB],LY180_06845,[LY180_06850]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	= 1446671	0 (0.000)	23 (0.560)	22/584	1.0	100%	coding (924/984 nt)	zntB	zinc transporter
	?	CP006584	1449629 =	0 (0.000)					coding (18/936 nt)	LY180_06850	tRNA 2‑thiocytidine biosynthesis protein TtcA

AGCGATGACCAACGCCGTCGGATGCAGGATATTGCCGATCGCCTTGGGCGCGGTCTTGACGAAATCGACGCCTGTATAGCACGGACTGGCGTGATGGCGGATGAAATCGCTCAGGTGATGCAGGAAAATTTAGCTCGTCGTACCTATACAATGTCATTGATGGCAATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTCTGTTAGTTGTTCTTATTGGTGGTGTTGCTTTATGGTTGCACCGTAGTAAATGGTTGTAACAAAAGCAATTTTTCCGGCTGTCTGTATACAAAAACGCCGCAAAGTTTGAGCGAAGTCAATAAACTCTCTACCCATTCAGGGCAATATCTCCCTTGCAGGTGAATGCAACGTCAAGCGATGGGCGTTGCGCTCCATATTGTCTTACTTCCTTTTTTGAATTACTGCATAGCACAATTGATTCGTACGACGCCGACTTTGATGAGTCGGCTTTTTTTTGCCTGTT  >  CP006584/1446405‑1446955                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                             ggcGATGGCCAACGTCGGAGGATGCGGGTTATTGCGGATCGCCGTGTGCGCGGGCTGGACGAAATAGACGCCTGTATCGCACAGACGGGCGGGCTGGCGGATGAAATCGCTCAGGTGATGCAGGAAAAGTTGGCTCGTCGTACCTATACAATGTCATTGATGGCAATGGTCTGTTTACCCAGTACCTGTCTGACAGGGTTATTGTGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTTGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctc                                                                                                                                                                                                                                                               <  2:137917‑M1/297‑32 (MQ=255)             gcgctgggtatgaagaataTTCCGGTTTGCCTTGGGTGTGGCTTTGACGAAATCGACGCCGGTATAGCACGGACGGGTGTGATGGCGGATGAAATCGCTCAGTTGATGCAGGAAAATTTAGCTCGTCGTACCTATACAATGTCATTGATGGCAATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatg                                                                                                                                                                                                                                                   <  2:10308‑M1/289‑44 (MQ=255)               ccGTCGGATGCAGGATATTGCCGATCGCCTTGGGCGCGGTCTTGACGAAATCGACGCCTGTATAGCACGGACTGGCGTGATGGCGGATGAAATCGCTCAGGTGATGCAGGAAAATTTAGCTCGTCGTACCTATACAATGTCATTGATGGCCATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTAATTTTTTTGTCTTttgttgattttcttacatttttttagctccttggtcataaatgtg                                                                                                                                                                                                                                                 >  2:4956‑M1/1‑253 (MQ=255)                                 tgccgggtgccgtggggGGGGTCTGAACGAAAACCACGCCTGTATGGGAGGGATTGGCGTGATGGAGGATGAAATCGCTTAGGGGATGCAGGAAAATTTTGCCCGTCGTACCTTTACAATGTCATTGATGGCAATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaact                                                                                                                                                                                                                               <  2:234026‑M1/290‑64 (MQ=255)                                        cGCCTTGGGCGCGGTCTTGACGAAATCGACGCCTGTATAGCACGGACTGGCGTGATGGCGGATGAAATCGCTCAGGTGATGCAGGAAAATTTAGCTCGTCGTACCTATACAATGTCATTGATGGCAATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaac                                                                                                                                                                                                                        <  1:5388‑M1/298‑71 (MQ=255)                                                              aaaTCGACGCCTGTATAGCACGGACTGGCGTGATGGCGGATGAAATCGCTCAGGTGATGCAGGAAAATTTAGCTCGTCGTACCTATACAATGTCATTGATGGCAATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCTTGTCGGCGGGTGGCACTTCGGATCTTCACTTTTTTGTATTtggttgattttctggcattatttcagttctctgttaataaatgggtaaaattgtgggacacatttgaccctacgataacagcgcactcaaaa                                                                                                                                                                                                  >  2:91182‑M1/1‑206 (MQ=255)                                                                      gCCAGTATAGCACGGAATTGCGTGATGGCGGATGAAAGCGCTCAGGTGATGCAGGAAAATTTAGGTCGTCGTACCTATACAATGTCATTTATGGCAATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatc                                                                                                                                                                                          <  2:148641‑M1/298‑101 (MQ=255)                                                                                                                 aGGTGATGCAGGAAAATTTAGCTCGTCGTACCTATACAATGTCATTGATGGCAATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggccaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcat                                                                                                                                               >  1:16881‑M1/1‑155 (MQ=255)                                                                                                                 aGGTGATGCAGGAAAATTTAGCTCGTCGTACCTATACAATGTCATTGATGGCAATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcat                                                                                                                                               >  1:310036‑M1/1‑155 (MQ=255)                                                                                                                     gATGCAGGAAAATTTAGCTCGTCGTACCTATACAATGTCATTGATGGCAATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcatacac                                                                                                                                           <  1:233111‑M1/298‑148 (MQ=255)                                                                                                                        gCAGGAAAATTTAGCTCGTCGTACCTATACAATGTCATTGATGGCAATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgtggattttcttccattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcacctacgatcaccgcgcattcaacatgccgatctgttcgtcgttcatgtcatcaatcaacacaacataaattacatccaccac                                                                                                                                        >  2:9628‑M1/1‑148 (MQ=255)                                                                                                                                                                  gtgaattgTCTTTTTACCCAGTACATTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGGGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcatgcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgg                                                                                              <  2:194086‑M1/295‑193 (MQ=255)                                                                                                                                                                              ttttCCCAGTACCTTTCTGACATGGTTATTTGGCGTCAACCTTGGTGGTGTCCCTGGCGGCGGGTGGCAATTCTGTTTTTTAATTTTTGTTATTttgttgagtttcttgcattatttcagttctttggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgggttcgctcctgc                                                                                  <  2:138424‑M1/298‑205 (MQ=255)                                                                                                                                                                                   ccAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgggttcgctcctgccgtca                                                                             >  1:143527‑M1/1‑89 (MQ=255)                                                                                                                                                                                     aGTTCCTTTCTGACAGGGTTATTTGGCGGTATGCTGGGTGGGATCTCGGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcactccacataccgtaaatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgggttcgctcctgccgtcaac                                                                           <  2:270631‑M1/298‑212 (MQ=255)                                                                                                                                                                                                    gggTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgggttcgctcctgccgtcaacagccagcaggcaaaa                                                            >  1:58241‑M1/1‑72 (MQ=255)                                                                                                                                                                                                         aTTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgggttcgctcctgccgtcaacagccagcaggcaaaagtatg                                                       <  1:9628‑M1/298‑232 (MQ=255)                                                                                                                                                                                                            tGGCGGCAACCTTGGTTGGATCCCTGGTGGCGTGTGGCAATTCGGATTTTTAATTTTTTGTATTtttttgattttgtgtcattattttaggtctcttggactaaagggggaaaattgggggcaaactttgcaattactataaccgcgcagtcaacatggctagctgttcgtcgttcatgtcatcaatccacataccgtatatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgggttcgctcctgccgtcaacagccagcaggcaaaagtatgccg                                                    <  2:16881‑M1/298‑235 (MQ=255)                                                                                                                                                                                                                          gtggGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgggttcgctcctgccgtcaacagccagcaggcaaaagtatgccgcgtatggtacggat                                      >  1:211044‑M1/1‑50 (MQ=255)                                                                                                                                                                                                                                tCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgggttcgctcctgccgtcaacagccagcaggcaaaagtatgccgcgtatggtacggattacggc                                >  1:349726‑M1/1‑44 (MQ=255)                                                                                                                                                                                                                                           gggTGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcagcatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgggttcgctcctgccgtcaacagccagcaggcaaaagtatgccgcgtatggtacggattacggcggcgaatacca                     <  1:4956‑M1/298‑266 (MQ=255)                                                                                                                                                                                                                                              tGGCAATTCGGATTTTCAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgggttcgctcctgccgtcaacagccagcaggcaaaagtatgccgcgtatggtacggattacggcggcgaataccagca                  >  1:47729‑M1/1‑30 (MQ=255)                                                                                                                                                                                                                                                              cAATTTTTTGTATTttgttgattttcttgcattatttcagttctctggtactaaatggggcaaattgggggcaaactttgcaactacgataaccgcgcattcaacatggctatctgttcgtcgttcatgtcatcaatccacataccgtaaatttcatacaccatctgcgcagtttcatgccccatttggctggctataaatgccgggttcgctcctgccgtcaacagccagcaggcaaaagtatgccgcgtatggtacggattacggcggcgaataccagcacgttttactgctgcat  <  1:91182‑M1/298‑285 (MQ=255)                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                             AGCGATGACCAACGCCGTCGGATGCAGGATATTGCCGATCGCCTTGGGCGCGGTCTTGACGAAATCGACGCCTGTATAGCACGGACTGGCGTGATGGCGGATGAAATCGCTCAGGTGATGCAGGAAAATTTAGCTCGTCGTACCTATACAATGTCATTGATGGCAATGGTCTTTTTACCCAGTACCTTTCTGACAGGGTTATTTGGCGTCAACCTTGGTGGGATCCCTGGCGGCGGGTGGCAATTCGGATTTTCAATTTTTTGTATTCTGTTAGTTGTTCTTATTGGTGGTGTTGCTTTATGGTTGCACCGTAGTAAATGGTTGTAACAAAAGCAATTTTTCCGGCTGTCTGTATACAAAAACGCCGCAAAGTTTGAGCGAAGTCAATAAACTCTCTACCCATTCAGGGCAATATCTCCCTTGCAGGTGAATGCAACGTCAAGCGATGGGCGTTGCGCTCCATATTGTCTTACTTCCTTTTTTGAATTACTGCATAGCACAATTGATTCGTACGACGCCGACTTTGATGAGTCGGCTTTTTTTTGCCTGTT  >  CP006584/1446405‑1446955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑