Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP006584	1,446,672	Δ2,957 bp		[zntB]–[LY180_06850]	[zntB], LY180_06845, [LY180_06850]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP006584	1446672	1449628	2957	23 [0]	[0] 23	[zntB]–[LY180_06850]	[zntB],LY180_06845,[LY180_06850]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	= 1446671	0 (0.000)	23 (0.560)	22/584	1.0	100%	coding (924/984 nt)	zntB	zinc transporter
	?	CP006584	1449629 =	0 (0.000)					coding (18/936 nt)	LY180_06850	tRNA 2‑thiocytidine biosynthesis protein TtcA

CTTTTCAAGATACTCGGGCAGAACGTGTTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGATTGTATTGTTCTTTCTTTGTAGTTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATGCCGCGTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCAT  >  CP006584/1449362‑1449912                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                            ggcgatggccaacgtcggaggatgcgggttattgcggatcgccgtgtgcgcgggctggacgaaatagacgcctgtatcgcacagacgggcgggctggcggatgaaatcgctcaggtgatgcaggaaaagttggctcgtcgtacctatacaatgtcattgatggcaatggtctgtttacccagtacctgtctgacagggttattgtgcgtcaaccttggtgggatccctggcggcgggttgcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTtctc                                                                                                                                                                                                                                                               <  2:137917‑M2/31‑1 (MQ=255)             gcgctgggtatgaagaatattccggtttgccttgggtgtggctttgacgaaatcgacgccggtatagcacggacgggtgtgatggcggatgaaatcgctcagttgatgcaggaaaatttagctcgtcgtacctatacaatgtcattgatggcaatggtctttttacccagtacctttctgacagggttatttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATg                                                                                                                                                                                                                                                   <  2:10308‑M2/43‑1 (MQ=255)               ccgtcggatgcaggatattgccgatcgccttgggcgcggtcttgacgaaatcgacgcctgtatagcacggactggcgtgatggcggatgaaatcgctcaggtgatgcaggaaaatttagctcgtcgtacctatacaatgtcattgatggccatggtctttttacccagtacctttctgacagggttatttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttaatttttttgtcttTTGTTGATTTTCTTACATTTTTTTAGCTCCTTGGTCATAAatgtg                                                                                                                                                                                                                                                 >  2:4956‑M2/254‑296 (MQ=255)                                 tgccgggtgccgtggggggggtctgaacgaaaaccacgcctgtatgggagggattggcgtgatggaggatgaaatcgcttaggggatgcaggaaaattttgcccgtcgtacctttacaatgtcattgatggcaatggtctttttacccagtacctttctgacagggttatttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACt                                                                                                                                                                                                                               <  2:234026‑M2/63‑1 (MQ=255)                                        cgccttgggcgcggtcttgacgaaatcgacgcctgtatagcacggactggcgtgatggcggatgaaatcgctcaggtgatgcaggaaaatttagctcgtcgtacctatacaatgtcattgatggcaatggtctttttacccagtacctttctgacagggttatttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAAc                                                                                                                                                                                                                        <  1:5388‑M2/70‑1 (MQ=255)                                                              aaatcgacgcctgtatagcacggactggcgtgatggcggatgaaatcgctcaggtgatgcaggaaaatttagctcgtcgtacctatacaatgtcattgatggcaatggtctttttacccagtacctttctgacagggttatttggcgtcaaccttggtgggatccttgtcggcgggtggcacttcggatcttcacttttttgtattTGGTTGATTTTCTGGCATTATTTCAGTTCTCTGTTAATAAATGGGTAAAATTGTGGGACACATTTGACCCTACGATAACAGCGCACtcaaaa                                                                                                                                                                                                  >  2:91182‑M2/207‑296 (MQ=255)                                                                      gccagtatagcacggaattgcgtgatggcggatgaaagcgctcaggtgatgcaggaaaatttaggtcgtcgtacctatacaatgtcatttatggcaatggtctttttacccagtacctttctgacagggttatttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATc                                                                                                                                                                                          <  2:148641‑M2/100‑1 (MQ=255)                                                                                                                 aggtgatgcaggaaaatttagctcgtcgtacctatacaatgtcattgatggcaatggtctttttacccagtacctttctgacagggttatttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCCAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCAt                                                                                                                                               >  1:16881‑M2/156‑298 (MQ=255)                                                                                                                 aggtgatgcaggaaaatttagctcgtcgtacctatacaatgtcattgatggcaatggtctttttacccagtacctttctgacagggttatttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCAt                                                                                                                                               >  1:310036‑M2/156‑298 (MQ=255)                                                                                                                     gatgcaggaaaatttagctcgtcgtacctatacaatgtcattgatggcaatggtctttttacccagtacctttctgacagggttatttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATacac                                                                                                                                           <  1:233111‑M2/147‑1 (MQ=255)                                                                                                                        gcaggaaaatttagctcgtcgtacctatacaatgtcattgatggcaatggtctttttacccagtacctttctgacagggttatttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTGGATTTTCTTCCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCACCTACGATCACCGCGCATTCAACATGCCGATCTGTTCGTCGTTCATGTCATCAATCAACACAACATAAATTACAtccaccac                                                                                                                                        >  2:9628‑M2/149‑297 (MQ=255)                                                                                                                                                                  gtgaattgtctttttacccagtacatttctgacagggttatttggcgtcaaccttggtgggatccctgggggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATGCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCgg                                                                                              <  2:194086‑M2/192‑1 (MQ=255)                                                                                                                                                                              ttttcccagtacctttctgacatggttatttggcgtcaaccttggtggtgtccctggcggcgggtggcaattctgttttttaatttttgttattTTGTTGAGTTTCTTGCATTATTTCAGTTCTTTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGc                                                                                  <  2:138424‑M2/204‑1 (MQ=255)                                                                                                                                                                                   ccagtacctttctgacagggttatttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCa                                                                             >  1:143527‑M2/90‑298 (MQ=255)                                                                                                                                                                                     agttcctttctgacagggttatttggcggtatgctgggtgggatctcgggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCACTCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAAc                                                                           <  2:270631‑M2/211‑1 (MQ=255)                                                                                                                                                                                                    gggttatttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCaaaa                                                            >  1:58241‑M2/73‑298 (MQ=255)                                                                                                                                                                                                         atttggcgtcaaccttggtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATg                                                       <  1:9628‑M2/231‑1 (MQ=255)                                                                                                                                                                                                            tggcggcaaccttggttggatccctggtggcgtgtggcaattcggatttttaattttttgtattTTTTTGATTTTGTGTCATTATTTTAGGTCTCTTGGACTAAAGGGGGAAAATTGGGGGCAAACTTTGCAATTACTATAACCGCGCAGTCAACATGGCTAGCTGTTCGTCGTTCATGTCATCAATCCACATACCGTATATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATGCcg                                                    <  2:16881‑M2/234‑1 (MQ=255)                                                                                                                                                                                                                          gtgggatccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATGCCGCGTATGGTACGGAt                                      >  1:211044‑M2/51‑298 (MQ=255)                                                                                                                                                                                                                                tccctggcggcgggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATGCCGCGTATGGTACGGATTAcggc                                >  1:349726‑M2/45‑298 (MQ=255)                                                                                                                                                                                                                                           gggtggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAGCATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATGCCGCGTATGGTACGGATTACGGCGGCGAATACCa                     <  1:4956‑M2/265‑1 (MQ=255)                                                                                                                                                                                                                                              tggcaattcggattttcaattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATGCCGCGTATGGTACGGATTACGGCGGCGAATACCAGCa                  >  1:47729‑M2/31‑298 (MQ=255)                                                                                                                                                                                                                                                              caattttttgtattTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATGCCGCGTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCAt  <  1:91182‑M2/284‑1 (MQ=255)                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                            CTTTTCAAGATACTCGGGCAGAACGTGTTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGATTGTATTGTTCTTTCTTTGTAGTTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATGCCGCGTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCAT  >  CP006584/1449362‑1449912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑