mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_KO_pgi | 4,294,494 | 0 | C | T | 30.7% | 200.7 / 123.6 | 153 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 240 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 4541124 | 120 (0.890) | 26 (0.210) | 25/262 | 9.9 | 17.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_KO_pgi | = 4541420 | 131 (1.030) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_KO_pgi | = 3944978 | NA (NA) | 19 (0.150) | 16/268 | 13.8 | 24.6% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_KO_pgi | = 4038811 | 61 (0.450) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_KO_pgi | = 2521499 | 144 (1.060) | 16 (0.130) | 14/258 | 14.3 | 10.3% | intergenic (+171/+94) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB |
| ? | NC_000913_3_KO_pgi | = 2521504 | 145 (1.160) | intergenic (+176/+89) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913_3_KO_pgi | = 781839 | 159 (1.170) | 16 (0.130) | 14/258 | 14.3 | 10.4% | intergenic (+187/‑246) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| ? | NC_000913_3_KO_pgi | = 2521488 | 129 (1.030) | intergenic (+160/+105) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913_3_KO_pgi | = 781823 | 147 (1.080) | 16 (0.130) | 14/258 | 14.3 | 10.2% | intergenic (+171/‑262) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| ? | NC_000913_3_KO_pgi | = 2521504 | 145 (1.160) | intergenic (+176/+89) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913_3_KO_pgi | = 781823 | 147 (1.080) | 16 (0.130) | 14/258 | 14.3 | 10.3% | intergenic (+171/‑262) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| ? | NC_000913_3_KO_pgi | = 781828 | 144 (1.150) | intergenic (+176/‑257) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913_3_KO_pgi | = 3003998 | 110 (0.810) | 10 (0.090) | 10/232 | 15.1 | 9.6% | intergenic (+30/+10) | xdhC/ygeV | xanthine dehydrogenase, Fe‑S binding subunit/putative sigma‑54‑interacting transcriptional activator |
| ? | NC_000913_3_KO_pgi | = 3003974 | 97 (0.860) | intergenic (+6/+34) | xdhC/ygeV | xanthine dehydrogenase, Fe‑S binding subunit/putative sigma‑54‑interacting transcriptional activator | |||||
| * | ? | NC_000913_3_KO_pgi | = 4177170 | 128 (0.940) | 11 (0.090) | 11/256 | 15.9 | 8.5% | intergenic (+42/‑188) | tufB/secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| ? | NC_000913_3_KO_pgi | = 4177172 | 121 (0.980) | intergenic (+44/‑186) | tufB/secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit | |||||
| * | ? | NC_000913_3_KO_pgi | 4045637 = | 172 (1.270) | 11 (0.090) | 11/258 | 16.0 | 6.4% | intergenic (+8/+33) | yihF/yihG | DUF945 family protein/inner membrane protein, inner membrane acyltransferase |
| ? | NC_000913_3_KO_pgi | 4045665 = | 161 (1.290) | intergenic (+36/+5) | yihF/yihG | DUF945 family protein/inner membrane protein, inner membrane acyltransferase | |||||
| * | ? | NC_000913_3_KO_pgi | 2729475 = | 72 (0.530) | 11 (0.090) | 11/260 | 16.1 | 13.6% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_KO_pgi | = 4168363 | 73 (0.580) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||