breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913_3_KO_pgi	4,294,494	0	C	T	26.3%	502.8 / 213.8	304	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 571 shown)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_KO_pgi	3186096 =	NA (NA)	137 (0.560)	97/282	3.4	57.3%	intergenic (+6/‑91)	yqiG/insC1	pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA
	?	NC_000913_3_KO_pgi	= 4383975	102 (0.420)					coding (149/315 nt)	yjeN	uncharacterized protein
*	?	NC_000913_3_KO_pgi	4383971 =	114 (0.470)	133 (0.540)	95/282	3.6	53.8%	coding (145/315 nt)	yjeN	uncharacterized protein
	?	NC_000913_3_KO_pgi	= 4497945	NA (NA)					intergenic (+11/+82)	insD1/yjgX	IS2 transposase TnpB/pseudogene fragment
*	?	NC_000913_3_KO_pgi	= 4541124	219 (0.890)	65 (0.280)	49/264	11.5	23.4%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913_3_KO_pgi	= 4541420	220 (0.960)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
*	?	NC_000913_3_KO_pgi	4541116 =	228 (0.930)	53 (0.230)	46/264	12.4	19.4%	intergenic (+49/‑433)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913_3_KO_pgi	4541430 =	226 (0.990)					intergenic (+363/‑119)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
*	?	NC_000913_3_KO_pgi	4171760 =	213 (0.870)	29 (0.130)	19/254	22.6	13.1%	intergenic (+4/‑297)	rrfB/murB	5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
	?	NC_000913_3_KO_pgi	4171804 =	NA (NA)					intergenic (+48/‑253)	rrfB/murB	5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
*	?	NC_000913_3_KO_pgi	= 2662574	NA (NA)	18 (0.110) +49 bp	8/184	23.7	NA	noncoding (266/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913_3_KO_pgi	= 2662583	NA (NA)					coding (741/741 nt)	trmJ	tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent
*	?	NC_000913_3_KO_pgi	= 2662483	180 (0.730)	18 (0.110) +49 bp	8/184	23.7	13.3%	noncoding (175/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913_3_KO_pgi	= 2662583	NA (NA)					coding (741/741 nt)	trmJ	tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent
*	?	NC_000913_3_KO_pgi	= 2662392	230 (0.940)	18 (0.110) +49 bp	8/184	23.7	10.8%	noncoding (84/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913_3_KO_pgi	= 2662583	NA (NA)					coding (741/741 nt)	trmJ	tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent
*	?	NC_000913_3_KO_pgi	3423376 =	259 (1.060)	38 (0.160)	20/278	23.9	13.5%	intergenic (+182/+47)	yhdZ/rrfF	putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
	?	NC_000913_3_KO_pgi	= 4213162	230 (0.950)					intergenic (+3/‑72)	rrfE/yjaA	5S ribosomal RNA of rrnE operon/stress‑induced protein
*	?	NC_000913_3_KO_pgi	= 4479393	NA (NA)	15 (0.070)	14/234	24.0	NA	intergenic (+33/+23)	yjgN/valS	DUF898 family inner membrane protein/valyl‑tRNA synthetase
	?	NC_000913_3_KO_pgi	= 4479369	NA (NA)					intergenic (+9/+47)	yjgN/valS	DUF898 family inner membrane protein/valyl‑tRNA synthetase