mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 52 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 1207805 | 64 (1.100) | 8 (0.160) | 8/246 | 5.4 | 12.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | = 1209602 | 59 (1.150) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4534121 | 67 (1.150) | 6 (0.110) | 6/258 | 6.5 | 8.6% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913_3_hsa_tpiA | = 4534142 | 65 (1.210) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3525435 | 75 (1.290) | 7 (0.130) | 6/260 | 6.5 | 9.0% | intergenic (+12/+154) | mrcA/nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| ? | NC_000913_3_hsa_tpiA | = 3525439 | 72 (1.330) | intergenic (+16/+150) | mrcA/nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 173588 | NA (NA) | 7 (0.130) | 6/264 | 6.6 | NA | noncoding (85/85 nt) | REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 4484368 | NA (NA) | noncoding (54/84 nt) | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3986604 = | 73 (1.260) | 5 (0.090) | 5/256 | 7.0 | 6.9% | noncoding (173/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | NC_000913_3_hsa_tpiA | 3986634 = | 67 (1.250) | noncoding (203/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1961824 | 55 (0.950) | 5 (0.090) | 5/258 | 7.0 | 8.9% | intergenic (+29/‑148) | argS/yecT | arginyl‑tRNA synthetase/uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | = 1961834 | 51 (0.950) | intergenic (+39/‑138) | argS/yecT | arginyl‑tRNA synthetase/uncharacterized protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4484368 | NA (NA) | 6 (0.110) | 5/264 | 7.1 | NA | noncoding (54/84 nt) | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 4606631 | NA (NA) | noncoding (92/92 nt) | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3736204 = | NA (NA) | 6 (0.110) | 5/264 | 7.1 | NA | noncoding (51/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 4484368 | NA (NA) | noncoding (54/84 nt) | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3520371 = | 71 (1.220) | 5 (0.090) | 5/264 | 7.1 | 6.6% | coding (333/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter |
| ? | NC_000913_3_hsa_tpiA | 3520402 = | 74 (1.340) | coding (302/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3082836 | NA (NA) | 6 (0.110) | 5/264 | 7.1 | NA | noncoding (147/147 nt) | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 4484368 | NA (NA) | noncoding (54/84 nt) | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||