mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 21.6% | 352.2 / 87.3 | 171 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 710 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 715221 | 117 (0.860) | 28 (0.230) | 23/232 | 10.1 | 20.5% | intergenic (+23/‑191) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| ? | NC_000913_3_pae_tpiA | = 715231 | 110 (0.880) | intergenic (+33/‑181) | pgm/ybfP | phosphoglucomutase/lipoprotein | |||||
| * | ? | NC_000913_3_pae_tpiA | 3426835 = | NA (NA) | 32 (0.240) | 23/254 | 11.2 | NA | intergenic (‑52/+123) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913_3_pae_tpiA | 3426855 = | NA (NA) | intergenic (‑72/+103) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913_3_pae_tpiA | 3269955 = | 160 (1.180) | 23 (0.190) | 19/230 | 11.5 | 14.6% | intergenic (+353/+261) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913_3_pae_tpiA | 3270096 = | 124 (1.010) | intergenic (+494/+120) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423823 = | NA (NA) | 25 (0.190) | 20/242 | 11.8 | 16.4% | intergenic (‑36/+57) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | = 3946688 | 134 (0.980) | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2726042 | 141 (1.040) | 20 (0.160) | 18/234 | 12.2 | 13.3% | intergenic (‑296/+27) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_pae_tpiA | 4040827 = | NA (NA) | intergenic (+191/+79) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_tpiA | = 382211 | NA (NA) | 22 (0.170) | 19/244 | 12.3 | NA | coding (538/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_pae_tpiA | = 382218 | NA (NA) | coding (545/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4040683 | 116 (0.850) | 46 (0.340) | 19/250 | 12.6 | 29.0% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | = 4213078 | 111 (0.830) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 278350 = | 155 (1.140) | 21 (0.160) | 17/240 | 12.9 | 12.5% | coding (453/1047 nt) | afuC | CP4‑6 prophage; putative ferric transporter subunit |
| ? | NC_000913_3_pae_tpiA | 278377 = | 148 (1.150) | coding (426/1047 nt) | afuC | CP4‑6 prophage; putative ferric transporter subunit | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423817 = | 0 (0.000) | 22 (0.170) | 17/242 | 13.0 | 100% | intergenic (‑30/+63) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | = 4040499 | NA (NA) | intergenic (+76/‑18) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 2726200 = | NA (NA) | 22 (0.170) | 17/242 | 13.0 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_pae_tpiA | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||