mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 27.7% | 219.2 / 104.7 | 141 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_tpiA | 1,315,807 | 0 | C | T | 21.6% | 68.9 / 16.4 | 37 | intergenic (‑37/+49) | yciF/yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| * | NC_000913_3_pae_tpiA | 3,781,051 | 0 | C | G | 21.6% | 261.6 / 75.4 | 111 | intergenic (+34/‑164) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913_3_pae_tpiA | 1,315,800 | 0 | A | G | 21.1% | 80.3 / 15.1 | 38 | intergenic (‑30/+56) | yciF/yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| * | NC_000913_3_pae_tpiA | 1,315,803 | 0 | C | T | 20.5% | 76.9 / 14.8 | 39 | intergenic (‑33/+53) | yciF/yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| Marginal new junction evidence (lowest skew 10 of 351 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 3852844 | 90 (1.230) | 17 (0.250) | 16/228 | 4.6 | 17.5% | intergenic (‑60/+46) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913_3_pae_tpiA | = 3852855 | 78 (1.170) | intergenic (‑71/+35) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
| * | ? | NC_000913_3_pae_tpiA | 2878074 = | 158 (2.160) | 17 (0.250) | 14/236 | 5.3 | 10.5% | intergenic (+456/+495) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913_3_pae_tpiA | 2878092 = | 142 (2.050) | intergenic (+474/+477) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | NC_000913_3_pae_tpiA | 2700550 = | 83 (1.130) | 13 (0.210) | 12/212 | 5.3 | 15.4% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913_3_pae_tpiA | 2700601 = | 72 (1.160) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913_3_pae_tpiA | 3383284 = | 75 (1.020) | 17 (0.260) | 13/226 | 5.4 | 21.1% | intergenic (+17/+46) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| ? | NC_000913_3_pae_tpiA | 3383314 = | 59 (0.890) | intergenic (+47/+16) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913_3_pae_tpiA | 225078 = | NA (NA) | 14 (0.200) | 13/236 | 5.6 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 3270070 = | 71 (0.970) | 17 (0.250) | 12/230 | 5.8 | 21.1% | intergenic (+468/+146) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913_3_pae_tpiA | 3270094 = | 62 (0.920) | intergenic (+492/+122) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913_3_pae_tpiA | 2084191 = | 69 (0.940) | 15 (0.220) | 12/232 | 5.9 | 18.5% | intergenic (+8/+35) | sbcB/yeeD | exodeoxyribonuclease I; exonuclease I/putative TusA family sulfurtransferase |
| ? | NC_000913_3_pae_tpiA | 2084215 = | 68 (1.000) | intergenic (+32/+11) | sbcB/yeeD | exodeoxyribonuclease I; exonuclease I/putative TusA family sulfurtransferase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3376260 | 84 (1.150) | 12 (0.180) | 11/226 | 6.0 | 14.4% | intergenic (+24/+19) | dcuD/sspB | putative transporter/ClpXP protease specificity enhancing factor |
| ? | NC_000913_3_pae_tpiA | = 3376265 | 67 (1.010) | intergenic (+29/+14) | dcuD/sspB | putative transporter/ClpXP protease specificity enhancing factor | |||||
| * | ? | NC_000913_3_pae_tpiA | 3915505 = | 75 (1.020) | 11 (0.160) | 11/232 | 6.2 | 13.8% | intergenic (‑305/+48) | glmU/atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| ? | NC_000913_3_pae_tpiA | 3915535 = | 68 (1.000) | intergenic (‑335/+18) | glmU/atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3782597 | 91 (1.240) | 12 (0.180) | 11/234 | 6.2 | 12.2% | intergenic (‑35/+45) | cysE/gpsA | serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+) |
| ? | NC_000913_3_pae_tpiA | = 3782604 | 87 (1.270) | intergenic (‑42/+38) | cysE/gpsA | serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+) | |||||