mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,112,190 | 0 | A | C | 58.9% | 142.0 / 207.7 | 159 | intergenic (‑60/‑41) | yiiQ/yiiR | DUF1454 family putative periplasmic protein/DUF805 family putative inner membrane protein |
| * | NC_000913_3_pae_tpiA | 4,158,984 | 0 | G | T | 51.9% | 10.6 / 267.9 | 155 | M193I (ATG→ATT) | oxyR | oxidative and nitrosative stress transcriptional regulator |
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 31.4% | 152.5 / 99.8 | 126 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 249 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 96 (1.020) | 16 (0.180) | 15/256 | 8.5 | 15.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 86 (0.970) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 91 (0.960) | 14 (0.160) | 13/256 | 9.3 | 14.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 87 (0.990) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 382205 | NA (NA) | 16 (0.170) | 14/272 | 9.5 | NA | coding (532/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_pae_tpiA | = 382224 | NA (NA) | coding (551/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3943635 | NA (NA) | 14 (0.160) | 12/260 | 9.9 | 15.7% | intergenic (+125/‑69) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_tpiA | = 4037446 | 79 (0.840) | intergenic (+111/‑73) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4459788 | 94 (0.990) | 10 (0.110) | 10/256 | 10.7 | 10.8% | intergenic (+17/+28) | cybC/nrdG | pseudogene, truncated cytochrome b562; cytochrome b(562)/anaerobic ribonucleotide reductase activating protein |
| ? | NC_000913_3_pae_tpiA | = 4459802 | 78 (0.880) | intergenic (+31/+14) | cybC/nrdG | pseudogene, truncated cytochrome b562; cytochrome b(562)/anaerobic ribonucleotide reductase activating protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4040727 | 94 (0.990) | 11 (0.120) | 10/256 | 10.7 | 11.0% | intergenic (+91/+179) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | = 4040732 | 91 (1.030) | intergenic (+96/+174) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4040683 | 130 (1.380) | 21 (0.230) | 11/270 | 10.8 | 16.3% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | = 4213078 | 88 (0.940) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 900706 | 95 (1.010) | 9 (0.100) | 9/250 | 11.0 | 9.3% | intergenic (‑131/+160) | artJ/artM | arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease |
| ? | NC_000913_3_pae_tpiA | = 900713 | 89 (1.030) | intergenic (‑138/+153) | artJ/artM | arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease | |||||
| * | ? | NC_000913_3_pae_tpiA | = 394471 | 92 (0.970) | 10 (0.120) | 9/248 | 11.0 | 10.8% | intergenic (+53/‑35) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
| ? | NC_000913_3_pae_tpiA | = 394475 | 82 (0.960) | intergenic (+57/‑31) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1175520 | 76 (0.800) | 12 (0.130) | 10/266 | 11.1 | 14.1% | coding (94/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein |
| ? | NC_000913_3_pae_tpiA | = 1175547 | 73 (0.800) | coding (121/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein | |||||