breseq  version 0.32.0  revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
JC 1,110 +66 bp intergenic (+1035/+2045) TMARI_RS09660 → / ← TMARI_RS00005 hypothetical protein/IGHMBP2 family helicase
RA 253,934 G→A D165N (GAT→AAT)  TMARI_RS01225 → hypothetical protein
RA 441,262 C→T C204Y (TGC→TAC)  gldA ← glycerol dehydrogenase
RA 448,951 T→C R536R (AGA→AGG)  TMARI_RS02175 ← methyl‑accepting chemotaxis protein 1
RA 529,409 A→G S45P (TCG→CCG)  TMARI_RS02570 ← ABC transporter ATP‑binding protein
RA 531,887 Δ1 bp intergenic (‑320/‑355) TMARI_RS02580 ← / → TMARI_RS02585 ABC transporter permease/molecular chaperone GroES
RA 588,234 C→T P200P (CCG→CCA)  carB ← carbamoyl‑phosphate synthase large chain
RA 1,568,476 G→T S5I (AGT→ATT)  TMARI_RS08065 → peptide chain release factor 2
RA 1,645,029 A→G L114P (CTT→CCT)  TMARI_RS08475 ← DNA‑binding response regulator
JC 1,814,273 (CCCT)2→1 intergenic (‑48/+60) TMARI_RS09830 ← / ← TMARI_RS09405 DUF4896 domain‑containing protein/maltose/maltodextrin ABC transporter substrate‑binding protein MalE
MC JC 1,815,540 Δ28 bp intergenic (‑23/‑201) TMARI_RS09405 ← / → TMARI_RS09410 maltose/maltodextrin ABC transporter substrate‑binding protein MalE/alpha‑amylase
RA 1,828,119 A→G V20A (GTT→GCT)  TMARI_RS09445 ← ROK family transcriptional regulator

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_021214 = 526640150 (0.450)139 (0.450) 86/418 2.7 46.7% coding (272/1002 nt) TMARI_RS02555 ABC transporter ATP‑binding protein
?NC_021214 529298 = 178 (0.570)coding (244/984 nt) TMARI_RS02570 ABC transporter ATP‑binding protein