Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 59 79.3 3391134 98.6% 3343658 146.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947_CJ‑RC 4,274,119 32 bp→GGAATTGTGAGCGGATAACAATTTCACACCGGAGGGAGTTTTGCG intergenic (‑243/‑1) glcC ← / → glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947_CJ‑RC 4274119 4274150 32 95 [0] [0] 101 glcC/glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947_CJ‑RC = 42741180 (0.000)74 (1.370)
+GGAATTGTGAGCGGATAACAATTTCACACCGGAGGGAGTTTTGCG		 58/200 0.0 100% intergenic (‑242/‑33) glcC/glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit
?NC_002947_CJ‑RC 4274151 = 0 (0.000)coding (1/1500 nt) glcD glycolate oxidase FAD‑linked subunit

GATK/CNVnator alignment

N/A