Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F25 I1 R1 60 73.8 3348830 98.7% 3305295 145.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947_CJ‑RC 4,274,119 32 bp→GGAATTGTGAGCGGATAACAATTTCACACCGGAGGGAGTTTTGCG intergenic (‑243/‑1) glcC ← / → glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947_CJ‑RC 4274119 4274150 32 81 [0] [0] 74 glcC/glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947_CJ‑RC = 42741180 (0.000)49 (0.930)
+GGAATTGTGAGCGGATAACAATTTCACACCGGAGGGAGTTTTGCG		 45/200 0.2 100% intergenic (‑242/‑33) glcC/glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit
?NC_002947_CJ‑RC 4274151 = 0 (0.000)coding (1/1500 nt) glcD glycolate oxidase FAD‑linked subunit

GATK/CNVnator alignment

N/A