Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F14 I0 R1 248 61.6 2601574 98.7% 2567753 146.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_002947_CJ‑RC 4,274,119 32 bp→GGAATTGTGAGCGGATAACAATTTCACACCGGAGGGAGTTTTGCG 100% intergenic (‑243/‑1) glcC ← / → glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947_CJ‑RC 4274119 4274150 32 75 [0] [0] 77 glcC/glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947_CJ‑RC = 42741180 (0.000)46 (1.230)
+GGAATTGTGAGCGGATAACAATTTCACACCGGAGGGAGTTTTGCG		 41/182 NT 100% intergenic (‑242/‑33) glcC/glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit
?NC_002947_CJ‑RC 4274151 = 0 (0.000)coding (1/1500 nt) glcD glycolate oxidase FAD‑linked subunit

GATK/CNVnator alignment

N/A