Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F14 I1 R1 57 86.1 3667460 98.7% 3619783 146.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947_CJ‑RC 4,768,005 T→A intergenic (+112/‑70) fpvA → / → tpaK TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947_CJ‑RC4,768,0050TA100.0% 297.8 / NA 90intergenic (+112/‑70)fpvA/tpaKTonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (44/46);  total (44/46)

AACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTAATTACAATTAATCATCGGCTCGTTTAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTCTTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGATACCAGTACATCG  >  NC_002947_CJ‑RC/4767861‑4768150
                                                                                                                                                |                                                                                                                                                 
aaCTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAAt                                                                                                                                               <  3:73425/149‑1 (MQ=255)
    tCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                                           >  4:308072/1‑149 (MQ=255)
    tCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                                           >  5:17494/1‑149 (MQ=255)
    tCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                                           >  5:23833/1‑149 (MQ=255)
     cACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                                           <  6:402705/148‑1 (MQ=255)
      aCCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGAt                                                                                                                                          <  3:308072/148‑1 (MQ=255)
       ccATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                                           >  8:101299/1‑146 (MQ=255)
        cATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGa                                                                                                                                           >  8:410171/1‑145 (MQ=255)
        cATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGAt                                                                                                                                          >  4:257760/1‑146 (MQ=255)
         aTCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAg                                                                                                                                       >  8:214222/1‑148 (MQ=255)
         aTCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGa                                                                                                                                      >  6:8997/1‑149 (MQ=255)
                    gTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATtgt                                                                                                                           <  1:14203/149‑1 (MQ=255)
                    gTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATtgt                                                                                                                           <  3:261675/149‑1 (MQ=255)
                     tACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATtgt                                                                                                                           <  7:214222/148‑1 (MQ=255)
                     tACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATtgt                                                                                                                           <  7:152529/148‑1 (MQ=255)
                       cAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTTTCTATGGAGGTCATGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGa                                                                                                                         <  3:392916/148‑1 (MQ=21)
                       cAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGa                                                                                                                         >  8:170750/1‑148 (MQ=255)
                       cAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGAGCGGTTTTTTGAATTAACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTTATCATCGGCTAGTATAATGTGATCAGACATGGAAATGTGAg                                                                                                                        >  1:212875/1‑149 (MQ=21)
                        aGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCCGAAATTTGAATTCACTAGTAGTCACTAAGGAGGACACGTATCAAAACAATTGACAATAAATAAACGGCTACTAAAATGAGATCAGACCTCCAATTGTGAGc                                                                                                                       >  2:409909/1‑149 (MQ=255)
                         gCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGc                                                                                                                       >  7:224546/1‑148 (MQ=255)
                          cTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCg                                                                                                                      >  1:201533/1‑148 (MQ=255)
                             cTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGa                                                                                                                    <  3:53389/147‑1 (MQ=255)
                              tGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATaa                                                                                                                 <  3:435980/149‑1 (MQ=255)
                                aTCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATaa                                                                                                                 <  4:318760/147‑1 (MQ=255)
                                    ccTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAAtta                                                                                                           >  5:156306/1‑148 (MQ=255)
                                         cGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAattatt                                                                                                         >  6:349136/1‑146 (MQ=255)
                                         cGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAg                                                                                                      <  5:319221/149‑1 (MQ=255)
                                          gTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTTTTGACAATTAATCATCGGCTCGTATAATGTGATCAGCCCTGGAATTGTGAGCGGATAACAattatt                                                                                                         >  3:266907/1‑145 (MQ=18)
                                          gTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAAttat                                                                                                          >  8:452962/1‑142 (MQ=255)
                                            tGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGAt                                                                                                    >  5:447558/1‑148 (MQ=255)
                                               aCGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTaa                                                                                                 <  5:8997/148‑1 (MQ=255)
                                                 tcAAAAAACCGCACCTGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATaa                                                                                                                                                >  2:290967/2‑99 (MQ=17)
                                                 gCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACTATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACt                                                                                               >  1:414237/1‑148 (MQ=17)
                                                 gCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACt                                                                                               >  2:414997/1‑148 (MQ=255)
                                                   aaaaaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGc                                                                                                                       <  5:304610/122‑1 (MQ=255)
                                                   aaaaaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGc                                                                                                                       >  6:304610/1‑122 (MQ=255)
                                                   aaaaaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTca                                                                                             >  6:301752/1‑148 (MQ=255)
                                                    aaaaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTcaca                                                                                           <  2:383595/149‑1 (MQ=255)
                                                    aaaaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTcaca                                                                                           <  2:10289/149‑1 (MQ=255)
                                                      aaaCCGCACCTGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTcac                                                                                            >  8:376859/1‑146 (MQ=14)
                                                      aaaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTcacaca                                                                                         >  4:53130/1‑149 (MQ=255)
                                                       aaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAg                                                                                        >  2:206502/1‑149 (MQ=255)
                                                       aaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAg                                                                                        <  3:161919/149‑1 (MQ=255)
                                                       aaCCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAg                                                                                        <  4:42170/149‑1 (MQ=255)
                                                          cGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGATCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGga                                                                                      <  7:322984/148‑1 (MQ=14)
                                                           gCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGgaga                                                                                    <  6:118536/149‑1 (MQ=255)
                                                              cccAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGatat                                                                                 <  6:23833/149‑1 (MQ=255)
                                                              cccAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGatat                                                                                 <  4:239748/149‑1 (MQ=255)
                                                              cccAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGatat                                                                                 <  6:17494/149‑1 (MQ=255)
                                                               ccAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATc                                                                                <  6:145206/149‑1 (MQ=255)
                                                                   gTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCatat                                                                            <  1:130055/149‑1 (MQ=255)
                                                                   gTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCatat                                                                            >  5:237523/1‑149 (MQ=255)
                                                                    tGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCATATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCatat                                                                            >  7:48761/1‑148 (MQ=11)
                                                                     gCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGt                                                                          >  4:274741/1‑149 (MQ=255)
                                                                          tttttGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCtt                                                                      <  7:426652/148‑1 (MQ=255)
                                                                           ttttGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAg                                                                    >  3:380514/1‑149 (MQ=255)
                                                                            tttGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTTCTATTGTCAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGTATTGTGAGCGGATAACAATTATTAAGATTATCTCACACAGGAGATATCATATGTCCTTAg                                                                    <  4:159692/148‑1 (MQ=11)
                                                                              tGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGc                                                                   <  8:224546/147‑1 (MQ=255)
                                                                              tGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCa                                                                  <  2:201533/148‑1 (MQ=255)
                                                                              tGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCa                                                                  <  1:206502/148‑1 (MQ=255)
                                                                                       tagtagTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATcgcgcg                                                        >  3:330136/1‑149 (MQ=255)
                                                                                       tagtagTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATcgcgcg                                                        >  1:164621/1‑149 (MQ=255)
                                                                                       tagtagTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATcgcgc                                                         <  7:452962/148‑1 (MQ=255)
                                                                                       tagtagTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATcgcgc                                                         >  8:383246/1‑148 (MQ=255)
                                                                                          tagtCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGa                                                     <  6:237523/149‑1 (MQ=255)
                                                                                             tctcTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGaca                                                   >  8:371123/1‑148 (MQ=255)
                                                                                               tctATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTg                                                >  4:130412/1‑149 (MQ=255)
                                                                                                 tATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGc                                               >  7:200786/1‑148 (MQ=255)
                                                                                                  aTGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCg                                             >  1:384006/1‑149 (MQ=255)
                                                                                                       ggTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGAttt                                        <  1:71666/149‑1 (MQ=255)
                                                                                                         tCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCa                                      <  4:330136/149‑1 (MQ=255)
                                                                                                           aGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCAt                                     <  1:398889/148‑1 (MQ=255)
                                                                                                           aGGTATGATTACAATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATc                                    >  6:386193/1‑149 (MQ=17)
                                                                                                            ggTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCAt                                     <  7:376859/147‑1 (MQ=255)
                                                                                                                 gATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTc                               <  8:432730/148‑1 (MQ=255)
                                                                                                                   ttACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTcgcg                            <  3:274741/149‑1 (MQ=255)
                                                                                                                   ttACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTcgcg                            <  3:364536/149‑1 (MQ=255)
                                                                                                                   ttACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTcgcg                            <  3:53130/149‑1 (MQ=255)
                                                                                                                     aCTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGc                          >  2:259402/1‑149 (MQ=255)
                                                                                                                          tgaCAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGt                      <  7:383246/146‑1 (MQ=255)
                                                                                                                            aCAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGa                    <  6:156306/148‑1 (MQ=255)
                                                                                                                             cAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGt                  <  5:65790/149‑1 (MQ=255)
                                                                                                                             cAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGt                  <  3:424849/149‑1 (MQ=255)
                                                                                                                              aaTTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTc                 >  4:264474/1‑149 (MQ=255)
                                                                                                                              aaTTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTc                 <  4:171421/149‑1 (MQ=255)
                                                                                                                                ttAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGa               >  1:347269/1‑149 (MQ=255)
                                                                                                                                    tcatcGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGATa             >  7:121622/1‑147 (MQ=255)
                                                                                                                                      atcGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGATACCa          <  4:348137/148‑1 (MQ=255)
                                                                                                                                          gCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGATACCAGTACa     >  1:361875/1‑149 (MQ=255)
                                                                                                                                             cGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTAGCGGCCAGTGAGTCGATACCAGTACATCg  >  3:369109/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                 
AACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTAATTACAATTAATCATCGGCTCGTTTAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTCTTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGATACCAGTACATCG  >  NC_002947_CJ‑RC/4767861‑4768150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTAATTACAATTAATCATCGGCTCGTTTAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTCTTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGATACCAGTACATCGTGAT  >  NC_002947_CJ‑RC/4767859‑4768154
                                                                                                                                                   |                                                                                                                                                     
acgacatctatcgctgtgactggagttcagacgtgttgctcttccgatctttCAAAAAACCGCACCTGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAAT                                                                                                                                                   <  NB501016:282:H2V7GAFX2:1:21109:1078:5635/99‑1 (MQ=21)
 AAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATG                                                                                                                                                  <  NB501016:282:H2V7GAFX2:2:11112:4466:16974/151‑1 (MQ=60)
     TTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGAT                                                                                                                                              >  NB501016:282:H2V7GAFX2:3:11403:26584:15243/1‑151 (MQ=60)
     TTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGAT                                                                                                                                              >  NB501016:282:H2V7GAFX2:3:11404:1164:15248/1‑151 (MQ=60)
       CACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCGGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATC                                                                                                                                             <  NB501016:282:H2V7GAFX2:2:21202:10519:14912/150‑1 (MQ=60)
                     AGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTG                                                                                                                              <  NB501016:282:H2V7GAFX2:1:11103:24247:1137/151‑1 (MQ=60)
                     AGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTG                                                                                                                              <  NB501016:282:H2V7GAFX2:2:21106:11921:2567/151‑1 (MQ=60)
                     AGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTG                                                                                                                              <  NB501016:282:H2V7GAFX2:4:11511:9983:16667/151‑1 (MQ=60)
                     AGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTG                                                                                                                              <  NB501016:282:H2V7GAFX2:4:11609:18255:13513/151‑1 (MQ=60)
                        ACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCTGTTTTTTGAATTCACTAGTAGTTTCTATGGAGGTCATGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAG                                                                                                                            <  NB501016:282:H2V7GAFX2:2:21305:12476:14656/150‑1 (MQ=60)
                        ACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGAGCGGTTTTTTGAATTAACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTTATCATCGGCTAGTATAATGTGATCAGACATGGAAATGTGAGC                                                                                                                           >  NB501016:282:H2V7GAFX2:1:11309:14322:4521/1‑151 (MQ=60)
                          AGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGG                                                                                                                         >  NB501016:282:H2V7GAFX2:4:11611:6315:6086/1‑151 (MQ=60)
                           GCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGG                                                                                                                         >  NB501016:282:H2V7GAFX2:1:11307:19780:8247/1‑150 (MQ=60)
                              TCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGAT                                                                                                                       <  NB501016:282:H2V7GAFX2:2:11109:17467:13399/149‑1 (MQ=60)
                               ATGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAAC                                                                                                                    <  NB501016:282:H2V7GAFX2:2:21312:3082:5180/151‑1 (MQ=60)
                                     GCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTAT                                                                                                              >  NB501016:282:H2V7GAFX2:3:11601:23387:4149/1‑151 (MQ=60)
                                          ACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGA                                                                                                         <  NB501016:282:H2V7GAFX2:3:21502:23052:10553/151‑1 (MQ=58)
                                           CGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTTTTGACAATTAATCATCGGCTCGTATAATGTGATCAGCCCTGGAATTGTGAGCGGATAACAATTATTA                                                                                                            >  NB501016:282:H2V7GAFX2:2:21106:2445:19386/1‑147 (MQ=54)
                                             TTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATT                                                                                                       >  NB501016:282:H2V7GAFX2:3:21610:22388:7732/1‑150 (MQ=52)
                                                AACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAAC                                                                                                    <  NB501016:282:H2V7GAFX2:3:11402:16975:8733/150‑1 (MQ=46)
                                                  CGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACTATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTC                                                                                                  >  NB501016:282:H2V7GAFX2:1:21305:3440:10506/1‑150 (MQ=41)
                                                    CAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCG                                                                                                                          <  NB501016:282:H2V7GAFX2:3:21412:10739:4769/124‑1 (MQ=42)
                                                        AAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGG                                                                                           <  NB501016:282:H2V7GAFX2:2:11302:20892:13148/151‑1 (MQ=31)
                                                          ACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGATCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAG                                                                                         <  NB501016:282:H2V7GAFX2:4:21502:23553:1383/151‑1 (MQ=26)
                                                                    GGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATG                                                                               >  NB501016:282:H2V7GAFX2:3:11612:8686:19628/1‑151 (MQ=5)
                                                                    GGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATG                                                                               <  NB501016:282:H2V7GAFX2:1:11208:15352:4757/151‑1 (MQ=5)
                                                                     GTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCATATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGT                                                                              >  NB501016:282:H2V7GAFX2:4:11408:10456:4471/1‑151 (MQ=5)
                                                                          GTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTA                                                                         <  NB501016:282:H2V7GAFX2:4:21606:10183:4142/151‑1 (MQ=5)
                                                                            TTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGC                                                                       >  NB501016:282:H2V7GAFX2:2:21303:17218:14705/1‑151 (MQ=5)
                                                                               TTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCAC                                                                     <  NB501016:282:H2V7GAFX2:1:11308:6374:4305/150‑1 (MQ=3)
                                                                                       ACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCG                                                            <  NB501016:282:H2V7GAFX2:4:21610:4791:7412/151‑1 (MQ=5)
                                                                                        CTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGT                                                           >  NB501016:282:H2V7GAFX2:1:11301:8336:11214/1‑151 (MQ=7)
                                                                                        CTAGTAGTCTCTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGT                                                           >  NB501016:282:H2V7GAFX2:2:21207:12160:4006/1‑151 (MQ=7)
                                                                                                  CTATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCG                                                 >  NB501016:282:H2V7GAFX2:4:11607:12994:10490/1‑151 (MQ=29)
                                                                                                   TATGGAGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGG                                                >  NB501016:282:H2V7GAFX2:1:21211:8508:17305/1‑151 (MQ=31)
                                                                                                        AGGTCAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTC                                           <  NB501016:282:H2V7GAFX2:1:11111:12837:7467/151‑1 (MQ=41)
                                                                                                            CAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATC                                        <  NB501016:282:H2V7GAFX2:4:21510:1439:7424/150‑1 (MQ=46)
                                                                                                            CAGGTATGATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATC                                        <  NB501016:282:H2V7GAFX2:1:21302:24098:12251/150‑1 (MQ=46)
                                                                                                                    ATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGG                               <  NB501016:282:H2V7GAFX2:2:21212:2226:16814/151‑1 (MQ=60)
                                                                                                                    ATTACTATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGG                               <  NB501016:282:H2V7GAFX2:2:21108:23206:6306/151‑1 (MQ=60)
                                                                                                                    ATTACTATTGACAATTAATCATCGGCTCGTATAAAGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGG                               <  NB501016:282:H2V7GAFX2:2:11109:19312:12543/151‑1 (MQ=60)
                                                                                                                           ATTGACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTG                         <  NB501016:282:H2V7GAFX2:4:21511:24704:6741/151‑1 (MQ=60)
                                                                                                                               ACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTC                     <  NB501016:282:H2V7GAFX2:3:11411:25131:8484/151‑1 (MQ=60)
                                                                                                                               ACAATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTC                     <  NB501016:282:H2V7GAFX2:2:21310:20654:11618/151‑1 (MQ=60)
                                                                                                                                  ATTAATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATAGATTCGCGGCCAGTGAGTCGAT                  >  NB501016:282:H2V7GAFX2:1:21206:2605:2691/1‑151 (MQ=60)
                                                                                                                                      ATCATCGGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGATACC               >  NB501016:282:H2V7GAFX2:4:11507:13334:3408/1‑150 (MQ=60)
                                                                                                                                            GGCTCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGATACCAGTACAT        >  NB501016:282:H2V7GAFX2:1:21208:14079:9398/1‑151 (MQ=60)
                                                                                                                                               TCGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTAGCGGCCAGTGAGTCGATACCAGTACATCGT     >  NB501016:282:H2V7GAFX2:2:21301:19437:14473/1‑151 (MQ=60)
                                                                                                                                                CGTATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGATACCAGTACATCGTG    >  NB501016:282:H2V7GAFX2:2:11101:8365:18388/1‑151 (MQ=60)
                                                                                                                                                   ATAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTATTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGATACCAGTACATCGAGAT  <  NB501016:282:H2V7GAFX2:3:21409:12642:5626/150‑1 (MQ=60)
                                                                                                                                                   |                                                                                                                                                     
GCAACTTCACCATCACCGCCAAGTACAGCTTCTGATCGCCTGACGTTGAACGCAAAAAACCGCACCCAGGTGCGGTTTTTTGAATTCACTAGTAGTCTCTATGGAGGTCAGGTATGATTACTAATTACAATTAATCATCGGCTCGTTTAATGTGATCAGACCTGGAATTGTGAGCGGATAACAATTCTTAAGATTAACTCACACAGGAGATATCATATGTCCTTAGCACCATCGCGCGTGACACTGCCGGATTTCATCGATTCGCGGCCAGTGAGTCGATACCAGTACATCGTGAT  >  NC_002947_CJ‑RC/4767859‑4768154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: