Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F13 I0 R1	225	82.7	3513940	98.5%	3461230	146.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947_CJ‑RC	6,054,485	T→G	10.7%	intergenic (+19/‑38)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947_CJ‑RC	6,054,485	0	T	G	10.7%	161.4 / 6.5	61	intergenic (+19/‑38)	ridA/PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
Reads supporting (aligned to +/- strand): ref base T (20/31); new base G (5/2); total (28/33)
Fisher's exact test for biased strand distribution p-value = 2.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTTCGCCAAGGTAAACGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCATCACTGC  >  NC_002947_CJ‑RC/6054337‑6054632

cTTCGCCAAGGTAAACGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCt                                                                                                                                                     <  5:95610/149‑1 (MQ=255)

    gCCAAGGTAAACGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGcc                                                                                                                                                  <  1:43450/148‑1 (MQ=255)

        aGGTAAACGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCa                                                                                                                                             >  2:87187/1‑149 (MQ=255)

         ggTAAACGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCAGGGCCCGTCAc                                                                                                                                            <  8:294404/149‑1 (MQ=255)

                      aTGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGTCGGGGCCGGCCCCGCCCCCACCGTCCTCTg                                                                                                                               >  3:404234/1‑149 (MQ=255)

                      aTGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCctct                                                                                                                                <  8:51360/148‑1 (MQ=255)

                          gCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAg                                                                                                                           <  2:346473/149‑1 (MQ=255)

                          gCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAg                                                                                                                           <  2:16842/149‑1 (MQ=255)

                           ccGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAgg                                                                                                                          <  4:51809/149‑1 (MQ=255)

                                aCTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCtccttc                                                                                                                                    <  1:345143/134‑1 (MQ=255)

                                aCTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCtccttc                                                                                                                                    >  2:345143/1‑134 (MQ=255)

                                  ttCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCACCATCCAAAGCAAGGTTAcccc                                                                                                                   >  2:65629/1‑149 (MQ=255)

                                     gAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTc                                                                                                                <  5:325415/149‑1 (MQ=255)

                                      aaCAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCa                                                                                                               <  2:310095/149‑1 (MQ=255)

                                        cAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATg                                                                                                             <  7:387985/149‑1 (MQ=255)

                                           cccTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGt                                                                                                          <  6:38138/149‑1 (MQ=255)

                                                cccGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAg                                                                                                      <  1:65629/148‑1 (MQ=255)

                                                   ggCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGCCGGGCCCTGCCCGTCACCCTCCTTACTCAGCAAGGTTACCCCGGCATGCGTCAAGAACt                                                                                                  >  6:207999/1‑149 (MQ=255)

                                                    gCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTTACCGGCCCTGGCCGGCCCCCTCCGTGCTCTGCAAAGTTACCCCCTCAATCGTCAAACACTg                                                                                                 >  4:148193/1‑149 (MQ=255)

                                                    gCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTg                                                                                                 <  5:184436/149‑1 (MQ=255)

                                                        gcgcCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACCGGCCCAGCCCGTCACCCTCCATACTCTGCAAGGTTAACCCCGCATTCGTCAAGCACTGccca                                                                                             >  2:99751/1‑148 (MQ=255)

                                                            cgccATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTcgc                                                                                         <  1:87187/149‑1 (MQ=255)

                                                            cgccATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACCGGCCCTGCCCCTCACCCTCCTTCCACTGCAAAGTTACCCCCTCAAGCGTCAAGCACAACCCTTccc                                                                                         >  8:226232/1‑147 (MQ=255)

                                                             gccATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTcgcg                                                                                        <  5:28420/149‑1 (MQ=255)

                                                                aTCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGATTGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTg                                                                                     <  7:278855/149‑1 (MQ=255)

                                                                 tCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTgg                                                                                    <  3:61946/149‑1 (MQ=255)

                                                                       ttGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGccc                                                                              <  6:52208/149‑1 (MQ=255)

                                                                          ccGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGc                                                                           <  3:20569/149‑1 (MQ=255)

                                                                          ccGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTACCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGc                                                                           <  2:238268/149‑1 (MQ=255)

                                                                           cGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACCGGCCCGGCCCGTCAACCGCCATACAATGCAAGGTTACACCGTAATGAGTCAAGCACTGCCCTTCCCGCTTGCAGcccatc                                                                           >  2:43815/1‑145 (MQ=255)

                                                                              aCTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACt                                                                       <  7:191090/149‑1 (MQ=255)

                                                                              aCTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACt                                                                       <  2:30831/149‑1 (MQ=255)

                                                                               cTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCGTCCTCTGCAAGGTTAACCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTg                                                                      >  6:100742/1‑149 (MQ=255)

                                                                                  ccGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCAGCCCGTAACCCTCCTAGCTCTGCAAGGTTACACCGTCAAGCGTCAAGCACTGCCCATCCCCCTAGCAGCCCAGCTTCTggtc                                                                   >  6:96542/1‑147 (MQ=255)

                                                                                   cGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGggcg                                                                  <  2:25506/149‑1 (MQ=255)

                                                                                       aGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTg                                                              <  7:437789/149‑1 (MQ=255)

                                                                                                  tCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCTCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCcaca                                                   <  8:439876/149‑1 (MQ=255)

                                                                                                  tCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACCGGCCCAGCCCCGCACCCACCATACACTGCAAAGTTAACCCCGCAATCGTAAAGCACAGCCCATAGCCCAGGCAGCCCAGCTAAAGGGCGGCGGCACCCCCcac                                                    >  4:328546/1‑148 (MQ=255)

                                                                                                       aTGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAAccc                                              >  6:392283/1‑149 (MQ=255)

                                                                                                        tGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTTCCCCGTCATGCGTCAAGCACAGCCCTTCGCGCTGGCAGCCCGGCTACTGGGCGGCTGCACCAGCCCCAAAccc                                              >  8:116022/1‑148 (MQ=255)

                                                                                                          gACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGaa                                           <  5:214337/149‑1 (MQ=255)

                                                                                                             gCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGAt                                        <  3:328546/149‑1 (MQ=255)

                                                                                                               cATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGAttt                                      <  3:152162/149‑1 (MQ=255)

                                                                                                                    tGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCGACATCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCAGCTACTGGGCGGCAGCACCAGCCCCAAACCCGAAGATTTCAACg                                 >  2:71619/1‑149 (MQ=255)

                                                                                                                      gTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGc                               <  3:162122/149‑1 (MQ=255)

                                                                                                                          tCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCATCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACAGCCCATCGCGCTGGCAGCCCAGCTACTGGGCGGCTGCACCAGCCACAAAACCGAAGATTTAAAAGGCAtat                           >  2:33824/1‑147 (MQ=255)

                                                                                                                             aaTGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCAcc                                                          <  5:160749/115‑1 (MQ=255)

                                                                                                                             aaTGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTACTCTGCAAGGTTAACCCGTCATGCGTGAAGCACTGCCCTTCGCGCTGGCAGCCCGGGTACTGGGCGGCTGCAcc                                                          >  6:160749/1‑115 (MQ=255)

                                                                                                                             aaTGATGCCCTGGTGACGGGCCCGGCCCGGCACCCACCATACTCTGCCAGGTTAACCCGTCATTCGTCAAGCACTGCCCGTAGCGCTGGCAGCCCGGCTACTGGGCGGCGGCACCAGCCACCAACCCGAAGATTTAAACCGCAACTGGa                        >  8:87540/1‑149 (MQ=255)

                                                                                                                                   gCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAAc                   <  3:30065/148‑1 (MQ=255)

                                                                                                                                     ccTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGAATTCAACCGCATCTGGATCAACCAg                >  4:231108/1‑149 (MQ=255)

                                                                                                                                     ccTGGTGACGGGCCATGCCCGTCACCCTCCTTCCTCTGAAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAg                >  2:89199/1‑149 (MQ=255)

                                                                                                                                       tGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAgg               >  4:18834/1‑148 (MQ=255)

                                                                                                                                          tGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGc           >  5:131071/1‑149 (MQ=255)

                                                                                                                                          tGACGGGCCCGGCCCGTCACCCTCCTTCCTCTGCAAGGGTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGAGCAACCAGGAAGc           >  3:145505/1‑149 (MQ=255)

                                                                                                                                           gACGGGCAGGGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTg                                                                                     <  7:79989/74‑1 (MQ=39)

                                                                                                                                           gACGGGCAGGGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTg                                                                                     >  8:79989/1‑74 (MQ=39)

                                                                                                                                            aCGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCa         >  1:426677/1‑149 (MQ=255)

                                                                                                                                              gggCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCAt        >  8:60687/1‑148 (MQ=255)

                                                                                                                                              gggCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCAt        >  1:285444/1‑148 (MQ=255)

                                                                                                                                               ggCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCATCa      <  1:99751/149‑1 (MQ=255)

                                                                                                                                                   cTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCATCACTgc  >  8:173290/1‑149 (MQ=255)

CTTCGCCAAGGTAAACGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCCTGCCCGTCACCCTCCTTCCTCTGCAAGGTTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCATCACTGC  >  NC_002947_CJ‑RC/6054337‑6054632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A