Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F14 I0 R1 232 80.4 3412326 98.3% 3354316 147.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947_CJ‑RC 6,054,485 T→G 20.2% intergenic (+19/‑38) ridA → / → PP_5304 aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947_CJ‑RC6,054,4850TG20.2% 131.0 / 10.1 66intergenic (+19/‑38)ridA/PP_5304aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (19/31);  new base G (12/2);  total (33/33)
Fisher's exact test for biased strand distribution p-value = 2.09e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCCAAGGTAAACGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCATCACTG  >  NC_002947_CJ‑RC/6054340‑6054631
                                                                                                                                                  |                                                                                                                                                    
cGCCAAGGTAAACGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑Tg                                                                                                                                                     <  6:522/147‑1 (MQ=255)
   cAAGGTAAACGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGGCGGGGCC‑TGGCCgg                                                                                                                                                >  7:401352/1‑148 (MQ=255)
    aaGGTAAACGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCAG‑GGCCCGTc                                                                                                                                               <  1:138254/149‑1 (MQ=255)
     aGGTAAACGAGGTGCTGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCa                                                                                                                                              <  7:205120/149‑1 (MQ=255)
          aaCGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCCTCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCGGGTGACGGGCAG‑GGCCCGTCAccagg                                                                                                                                         <  8:141900/149‑4 (MQ=255)
          aaCGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGCCGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACcctc                                                                                                                                         <  4:159775/149‑1 (MQ=255)
             gAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑GGCCCGTCACcctccgt                                                                                                                                      >  8:177502/1‑147 (MQ=255)
               ggTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCCTCACcctccata                                                                                                                                     >  6:124309/1‑145 (MQ=255)
                  gATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGGCCGGGCC‑GGGCCCTCACCCgccatccgag                                                                                                                                 >  6:18848/1‑146 (MQ=255)
                  gATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCctct                                                                                                                                 >  2:174303/1‑149 (MQ=255)
                     gggCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑GGCCCGGCCCCCGCCATCCTCTGc                                                                                                                               >  8:122056/1‑148 (MQ=255)
                              cTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCTAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTAcc                                                                                                                    <  3:125830/148‑1 (MQ=255)
                              cTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTAccc                                                                                                                   <  5:8049/149‑1 (MQ=255)
                                 cGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑GGCCCGGGCCCCTCCTTCCTCTGCAA‑GG‑TTAccccct                                                                                                                >  1:35397/1‑147 (MQ=255)
                                   aaCAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGGACCCCTCCTTCCTCTGCAA‑GG‑TTAACCCCTCa                                                                                                              >  5:375908/1‑149 (MQ=255)
                                      aGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGc                                                                                                           >  6:299795/1‑149 (MQ=255)
                                      aGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑GGCCCGTCACCCACCTTCCGCTGCAA‑GG‑TTACCCCGTCATGc                                                                                                           >  6:305419/1‑149 (MQ=255)
                                        cccTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCTAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGt                                                                                                         <  2:295839/149‑1 (MQ=255)
                                          cTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑GGCCCGTCCCCCTCCGTCCGCTGCAA‑GG‑TTACCCCGTCATGCGTc                                                                                                        >  8:339210/1‑148 (MQ=255)
                                           tACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑GGCCCGGCACCCTCCGTGCGCTGCAA‑GG‑TTACCCCGTCATGCGTc                                                                                                        >  5:166290/1‑147 (MQ=255)
                                             cccGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAg                                                                                                     <  7:267239/148‑1 (MQ=255)
                                               cGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGGCGGGCCC‑GGGCCGGCACCCGCCGTCCTCTGGCA‑GG‑TTTCCCCGTCATGCGTCAAGCAc                                                                                                  >  7:210292/1‑149 (MQ=255)
                                                ggCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCCCt                                                                                                 >  2:337800/1‑149 (MQ=255)
                                                   ccGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGGCCCCCTCCTTCCTCTGCAA‑GG‑TTACCCCCGCATTCGTCAAGCACTGcc                                                                                              >  6:139928/1‑149 (MQ=255)
                                                   ccGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACCGGCCCGTGCCCG‑CCCCCTACGTACACATCAA‑GG‑TTAACCCGTCAGGGCTCAAGCAATGcc                                                                                              >  8:373039/1‑149 (MQ=255)
                                                     gcgcCGCCATCGGCGTTGCCGCTCTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCt                                                                                            <  8:12119/149‑1 (MQ=255)
                                                       gccgccATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGGCGGGGCC‑GGCCCGGCACCCGCCGTGCGCTGGAA‑GGTTTACCCCG‑CATGCGGGAAGCCCAGCCCTTc                                                                                          >  5:105417/1‑149 (MQ=255)
                                                          gccATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTcgcg                                                                                       <  4:183675/149‑1 (MQ=255)
                                                           ccATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCgcgc                                                                                      <  2:315066/149‑1 (MQ=255)
                                                             aTCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTg                                                                                    <  5:176038/149‑1 (MQ=255)
                                                             aTCGGCGTTGCCGCAATGCCGAAAGGCTCACAGGTCGAAATGGACTCCATACTGGTCATCGAATGATGCCCTGGTGACGGGCCA‑TGCCAGTCACCCTCCTTCCTCTTCAA‑TG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTg                                                                                    <  5:169633/149‑1 (MQ=255)
                                                              gcggcggTGCCGCACCGCCGAACGGCGCCCCGGTCGAAATGGACGCCACCCTGGTCATCGAATGAGGCCCGGGTCACGGGCCC‑TGCCCGGCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTgg                                                                                   <  1:418245/148‑1 (MQ=255)
                                                              gcGGCGTTGCCGCACTGCCGAATGGGGCCCTGGTCTAAATGCACGCCATCGTGGTCTTCGAATGATGCCCTGGTGACGGGCCC‑TGCCGGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTgg                                                                                   <  5:18848/148‑1 (MQ=255)
                                                                    ttGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGGCCGGCCC‑GGCCCGGACCCCGCCATACAAGGCAACGT‑TTACCCCGAC‑TGCGGCAAGCACTTCCCATACCCCTGGCCGccc                                                                             >  4:218427/1‑149 (MQ=255)
                                                                               ccGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTgg                                                                    <  1:407278/147‑1 (MQ=255)
                                                                               ccGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGggc                                                                  <  3:289536/149‑1 (MQ=255)
                                                                                 gAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACACGACATAATATGCAA‑AG‑TTAACCCCAAAAACGTCAAGCACTGCCCATCTCCCATGCAGCCCAGCTAATGggcgg                                                                >  4:320445/1‑149 (MQ=255)
                                                                                    aGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGGCCGGCCC‑GGCCCGGGACCCACCATACACAGGAA‑AG‑TTAACCCCGCATGCGGCAAGCACAGCCCATAGCGCAGGCCGCCCGGCTACAGggcggcgg                                                             >  2:153383/1‑147 (MQ=255)
                                                                                             ggTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCca                                                    <  5:139928/149‑1 (MQ=255)
                                                                                              gTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCcac                                                   <  5:318240/149‑1 (MQ=255)
                                                                                              gTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGGCCCCCGGCGTCCGCTGCCA‑GG‑GTTACCCGTCATGCCGCAAGCACTGCCCTTCGCGCTGGCCGCCCGGCGAAGGGGCCGCTTCACCAGCcac                                                   >  2:5020/1‑149 (MQ=255)
                                                                                               tCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTTACGGGCCC‑AGCCCGTCCCCCTCCATACAATGCAA‑GG‑GTAACCCCTCATACGTAAAAGCCTAACCGTAGCGCTGGCAGCCCTGCGACTGGGCGGCTGCACCAGCcac                                                   >  8:231554/1‑148 (MQ=255)
                                                                                                 gAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACaaa                                                <  2:151198/149‑1 (MQ=255)
                                                                                                 gAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACaaa                                                >  6:199752/1‑149 (MQ=255)
                                                                                                       gACGCCATCCTGGTCATCGAATGATGCCCTGGTGGCGGGCCC‑GGCCCGGCACCCGCCTTCCGATGCAA‑GG‑TTTCCCCGGGATGCGGAAAGCACAGCCCGTAGCGCTGGCAGCCCAGCTAATGGGGGGCTGCACCAGCCCCAAAcccc                                            >  8:91035/1‑146 (MQ=255)
                                                                                                       gACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTGCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCGTCGCGCTGGCAGCCCTGCTACTGGGCGGCGGCCCCAGCCACAAACCCg                                            >  5:342364/1‑147 (MQ=255)
                                                                                                       gACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGaa                                          <  8:401352/149‑1 (MQ=255)
                                                                                                           ccATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGAtt                                      <  1:174303/149‑1 (MQ=255)
                                                                                                                 tGGTCATCGAATGATGCCCTGGTGACGGGCCC‑AGGCCGTCACCCGACGTACTATGCAA‑AG‑TTACCCCCGCAAGCCTAAAGCCCTGCCCGTAGCCCTTGCAGGCCGTCTACATGGCGGCGGGACCACCCCCCAACCCCAAGAATTAAAcc                                >  8:23628/1‑148 (MQ=255)
                                                                                                                   gTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACg                                <  4:368461/147‑1 (MQ=255)
                                                                                                                   gTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGc                              <  8:253165/149‑1 (MQ=255)
                                                                                                                         gAATGATGCCCTGGTGACGGGCCC‑TGCCGGTCACCCTCCTTCCTCTGCAA‑TG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTTGCAGCCCTGCTACTGGGCGGCTGCACGAGCCACAAACCCGAAGATTTCCACGGCTTCTgg                        <  2:212299/149‑1 (MQ=255)
                                                                                                                                   cTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAgg              <  3:146297/149‑1 (MQ=255)
                                                                                                                                    tGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAgg              >  2:218825/1‑148 (MQ=255)
                                                                                                                                    tGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAgg              >  8:217105/1‑148 (MQ=255)
                                                                                                                                       tGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGc          >  5:407039/1‑149 (MQ=255)
                                                                                                                                        gACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGc          >  3:254101/1‑148 (MQ=255)
                                                                                                                                         aCGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGcc         <  8:350303/148‑1 (MQ=255)
                                                                                                                                          cGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCAt       >  6:136195/1‑149 (MQ=255)
                                                                                                                                          cGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCAt       >  1:335164/1‑149 (MQ=255)
                                                                                                                                          cGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCAt       <  1:180443/149‑1 (MQ=255)
                                                                                                                                            ggCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCATCa     >  3:384934/1‑149 (MQ=255)
                                                                                                                                            ggCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCATCa     <  1:218825/149‑1 (MQ=255)
                                                                                                                                            ggCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCATCa     <  7:217105/149‑1 (MQ=255)
                                                                                                                                             gCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCATCAc    <  8:58007/149‑1 (MQ=255)
                                                                                                                                               cc‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCATCACTg  <  3:41196/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
CGCCAAGGTAAACGAGGTGATGGGCCGCTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCACTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATCCTGGTCATCGAATGATGCCCTGGTGACGGGCCC‑TGCCCGTCACCCTCCTTCCTCTGCAA‑GG‑TTACCCCGTCATGCGTCAAGCACTGCCCTTCGCGCTGGCAGCCCTGCTACTGGGCGGCTGCACCAGCCACAAACCCGAAGATTTCAACGGCATCTGGATCAACCAGGAAGCCATCACTG  >  NC_002947_CJ‑RC/6054340‑6054631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A