Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F11 I4 R1
|
73 |
908.3 |
39027734 |
99.3% |
38754539 |
136.2 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTG‑TT‑‑T‑‑CGGG‑‑CA‑CG‑C‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTC > AE015451_phaM1/1499349‑1499637
|
CAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCTCGAAACAGGCCCCACGGGGCATGGCCCCAGCTTTGTCGGTG‑TTct > LH00941:114:22FVMWLT1:2:2221:27321:25452/1‑149 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:2109:13814:29631/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:1251:23160:4923/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:1256:28134:22121/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:1246:37869:15347/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:1123:26156:13922/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:2109:13832:29631/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:1256:28143:22105/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTGTGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:1256:28153:22121/151‑7 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGTCCGCGAAACAAGAGCCGCGGTGCATGGCACCGGTTTTTCCGGTG‑TT‑‑TA‑CGGG‑‑CA‑CG‑C‑C > LH00941:114:22FVMWLT1:2:1218:3431:4731/1‑151 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CG‑C‑C < LH00941:114:22FVMWLT1:2:2154:18362:10255/151‑1 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CG‑C‑C < LH00941:114:22FVMWLT1:2:2250:37499:7437/151‑1 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGGGGCCACGAAACAAGCGCCACGGTGCCTGGCCACGGATTTTTCGGTGTTT‑‑T‑‑TGGG‑‑CA‑CG‑C‑C > LH00941:114:22FVMWLT1:2:1150:21163:23530/1‑151 (MQ=60)
CGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGTCCACGAAACAAGAGCCACGGTGCATGGCACCAGCTTTGCCGGTG‑TTcgctggcacaccc > LH00941:114:22FVMWLT1:2:2128:42713:22137/1‑138 (MQ=60)
ATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCTAAACAAGCTACGCGGTGCCTGGCACCCGCTTTGCCGGTG‑TT‑‑TG‑CTGG‑‑CA‑CGAC‑CGCTCCCCCAGACTTATTGCCAT > LH00941:114:22FVMWLT1:2:1215:11678:18278/1‑151 (MQ=60)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGTGTGCCCGCGAAAAAGGAGCCGCGGTGTAGGGCACCGGCTGTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CG‑CACGCTCCCACAGAACGATTGCCATT > LH00941:114:22FVMWLT1:2:2159:34596:5900/1‑151 (MQ=60)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGTCCGCGAAACAAGAGCCGCAGTGCCTGGCACCGGCTTTTCCGGTG‑TT‑‑Tttgggcacgcccgctcccccaaaacgagtgccact > LH00941:114:22FVMWLT1:2:2148:37971:13858/1‑116 (MQ=60)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGTCCGCGAAAAAAGCGCCGTGGTGCCCGGCACCTGCTTTGCCGGTG‑TT‑‑TG‑CGGG‑‑CA‑CGCC‑CGCTCCCACcaaccgagtgccatt > LH00941:114:22FVMWLT1:2:2247:14951:5884/1‑136 (MQ=60)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGTCCGCGAAAAAGGAGCCGCGGTGCATGGTACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGAATGGTTGCCACT > LH00941:114:22FVMWLT1:2:1255:43185:11328/1‑151 (MQ=60)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCTCGAAAAAGGAGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATT > LH00941:114:22FVMWLT1:2:2155:3191:14563/1‑151 (MQ=60)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCCTGGCACCGGCCTTTCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAAAATGATTGCCATT > LH00941:114:22FVMWLT1:2:2251:40421:20215/1‑151 (MQ=60)
GAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCACGAAAAAAGCGCCACGGTGCACGGCACCGGATTTTTCGGTG‑TTC‑T‑‑CGGG‑‑CA‑CGCC‑CACTCCCACAAACTGATTGCCCTTAAGA > LH00941:114:22FVMWLT1:2:1261:16800:19687/1‑151 (MQ=60)
GAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGTCCGCGAAACAGGAGACACGGTGCATGGCACCAGCTTTGCCGGTG‑TT‑‑Tgcgggtacaccctctcccccagactgactgcccttccgcgggcct > LH00941:114:22FVMWLT1:2:1236:10559:11024/1‑106 (MQ=60)
GAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGCCCACGAAAAAAGAGCCACGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcgggcaagccccctcccccaaaatgagttccactcaacgggcct > LH00941:114:22FVMWLT1:2:2127:38313:28254/1‑105 (MQ=40)
AACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGTCCACGAAACAAGCGCCACGGTGTATGGAAACAGCTTTTCCGGTG‑TTC‑G‑‑CGGGCCCA‑C‑‑C‑CGCTCCCACAGACTGGTTGCCATTCAGTGGGCCTG > LH00941:114:22FVMWLT1:2:1154:12926:25275/1‑151 (MQ=49)
AACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCACGAAACAAGAGCCGCGGTGCATGGCACCAGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑AGCC‑CACTCCCACAGAACGATTGCCACTCAGCGGGCCTA > LH00941:114:22FVMWLT1:2:2258:1361:22569/1‑151 (MQ=41)
TGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCACGAAAAAAGCGCCGCGGTGCATGGCCCCGGCCTTTCCGGTG‑TTcgcgggcacacccacccccacaaaccgatttcccttcaacaggcctctcgctaccat > LH00941:114:22FVMWLT1:2:1266:42473:4779/1‑94 (MQ=60)
GCACCACAGCAGGACTGAGGCTACCAAATGGGGGGAGCGGGCGTACCTGCGAAAAAGGCGCCTTGGTGCGTGGCACTGGTTTTTCTGGT‑‑TT‑‑TCGCGGG‑‑CACCC‑C‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGA < LH00941:114:22FVMWLT1:2:2157:26840:28942/151‑1 (MQ=35)
CAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCACGAAAAAGGCGCCACGGTGCATGGCAACAGCTTTGCCTGTG‑TTC‑T‑‑CGGG‑‑CA‑Cacccgctcccccagaacgatttccattacgcgggtccatcgctacaatggaggtaa > LH00941:114:22FVMWLT1:2:1260:17733:14066/1‑95 (MQ=60)
GAGGCTGCCAAACGGTGGGAGCGGGGGTGTCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTTTCGGTGTTT‑‑T‑‑CGGGAACA‑C‑‑C‑CCCTCCCACAGAATGGTTGTCATTCAGCGGGCCTATCGCTACAGTGACGGCCCATTTTTTTTT > LH00941:114:22FVMWLT1:2:1147:51737:13106/1‑151 (MQ=55)
tgtttcGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAATGACGGCCCGTTTTTTGTTGCCTCGCTAACGAA > LH00941:114:22FVMWLT1:2:1213:47789:3098/7‑151 (MQ=60)
CGGGCTTGCCCGCGAAACAGGCGCCGCGGGGCATGACACCGGCTTGGCTGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGAC < LH00941:114:22FVMWLT1:2:2169:46042:14803/151‑1 (MQ=60)
GGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCATTTTTTGTTGCCTCGCTAACGAATCATGACT > LH00941:114:22FVMWLT1:2:1108:46689:27677/1‑151 (MQ=60)
GGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTC > LH00941:114:22FVMWLT1:2:1237:40421:22329/1‑151 (MQ=60)
CCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGA > LH00941:114:22FVMWLT1:2:2106:43952:8494/1‑151 (MQ=60)
gctcggagatgtgtataagagacaggcacCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGNGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:2227:19656:1224/122‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:2129:24103:15684/121‑1 (MQ=60)
CGTGAAACAGGCGCTGTGGTGCATGGCACCGTCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:2163:47428:9967/151‑1 (MQ=60)
CGCGAAACAGGCGCTACGGTGCATGGCACCGGCTTTGCCGGTG‑TTCGT‑‑‑GGA‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACNGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:2260:49721:21208/151‑1 (MQ=60)
CGCGAAAAAGGCGCCGCGGTACATGGCACCGGCTTTTCTGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:2254:28023:23466/151‑1 (MQ=60)
CGCAAAACAGGCGCCACGGTGCATGGCACCGGCTTTGCCGGTG‑TTCGT‑‑‑GGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:2157:14100:1368/151‑1 (MQ=60)
ctcggagatgtgtataagagacaggcacCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAAC < LH00941:114:22FVMWLT1:2:1249:31425:21032/123‑1 (MQ=60)
GAAACAGGCGCCGCGGGGCATGGCACCGGTTTTGCTGGTG‑TTCGT‑‑‑GGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGC < LH00941:114:22FVMWLT1:2:2244:17022:20936/151‑1 (MQ=60)
agagacaGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAG < LH00941:114:22FVMWLT1:2:2262:50655:23754/144‑1 (MQ=60)
GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAG > LH00941:114:22FVMWLT1:2:1154:23354:10864/1‑151 (MQ=60)
GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCACGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAG > LH00941:114:22FVMWLT1:2:2264:3339:16452/1‑151 (MQ=60)
ctgtggtgcgtggccctggtttttCCGGTG‑TT‑‑TG‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAG < LH00941:114:22FVMWLT1:2:1149:4698:26524/127‑1 (MQ=60)
gcCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGA > LH00941:114:22FVMWLT1:2:2113:29188:17125/3‑151 (MQ=60)
GCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAT > LH00941:114:22FVMWLT1:2:1240:4365:14643/1‑151 (MQ=60)
CGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATC > LH00941:114:22FVMWLT1:2:2135:51700:14995/1‑151 (MQ=60)
GTNCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTNNGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1266:21931:1032/1‑151 (MQ=60)
GTNCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTNNGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1266:21912:1032/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGCACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1118:4596:29006/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCTAGCAGATCTG > LH00941:114:22FVMWLT1:2:2227:9709:21560/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCCAGCAGATCTG > LH00941:114:22FVMWLT1:2:2163:19749:12593/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2211:38137:21897/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2163:11142:3098/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2163:19758:12577/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2163:19767:12561/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1206:51394:29391/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2154:27681:10031/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2202:1185:10191/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2203:17216:3114/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2206:31111:9855/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2206:35151:12273/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1206:51413:29391/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1238:28393:18854/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1240:10559:27037/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2246:33496:6909/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2144:7065:8718/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1142:18945:5948/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1122:52180:10191/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1256:18307:3562/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1256:18316:3546/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1104:8627:9823/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2106:35854:14323/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCAGTTTTTTGTTGCCTCGCTAACGAATCATGAATCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2101:1240:15027/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACAGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCACTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2206:35160:12289/1‑151 (MQ=60)
ccgcgaacacCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGA > LH00941:114:22FVMWLT1:2:1206:11604:15203/11‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2257:31416:10512/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1230:51542:7357/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1141:36880:19431/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTAAAGTGACGGCCCG‑TTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAA > LH00941:114:22FVMWLT1:2:2170:20821:8910/1‑151 (MQ=60)
CATGGCACCGGTTTTGCCGGTG‑TT‑‑TG‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAA < LH00941:114:22FVMWLT1:2:1142:21376:19447/151‑1 (MQ=60)
TGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG > LH00941:114:22FVMWLT1:2:2241:17410:18374/1‑151 (MQ=60)
TGGCACCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG > LH00941:114:22FVMWLT1:2:2245:4569:17077/1‑151 (MQ=60)
ggcacCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGT > LH00941:114:22FVMWLT1:2:1245:37351:25083/6‑151 (MQ=60)
ggcacCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGT > LH00941:114:22FVMWLT1:2:2119:27792:22425/6‑151 (MQ=60)
ggcacCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGT > LH00941:114:22FVMWLT1:2:1143:6168:10848/6‑151 (MQ=60)
gcacCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:2134:37028:4090/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:1147:41484:26156/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:2134:37019:4106/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:1105:31786:12753/5‑151 (MQ=60)
GGCTTTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAC > LH00941:114:22FVMWLT1:2:2113:22079:8942/1‑151 (MQ=60)
TTGCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCT > LH00941:114:22FVMWLT1:2:1157:16624:19287/1‑151 (MQ=60)
GCCGGTG‑TTC‑G‑‑CGGG‑‑CA‑CGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTC > LH00941:114:22FVMWLT1:2:2216:3422:27581/1‑151 (MQ=60)
|
CAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTG‑TT‑‑T‑‑CGGG‑‑CA‑CG‑C‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTC > AE015451_phaM1/1499349‑1499637
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
