Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F73 I2 R1
|
76 |
833.2 |
37290668 |
99.4% |
37066923 |
136.3 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑‑T‑CGGGCAC‑G‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCT > AE015451_phaM1/1499348‑1499635
|
GCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑‑C < LH00941:114:22FVMWLT1:2:1151:19980:4859/151‑1 (MQ=60)
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGTGTGCCCGCGAAACAGGGGCCGCGGTGCATGGCACCGGTTTTGCCGGTGTTC‑T‑CG > LH00941:114:22FVMWLT1:2:1170:17678:7469/1‑151 (MQ=60)
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACATGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcg < LH00941:114:22FVMWLT1:2:1133:33755:8126/151‑5 (MQ=60)
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcg < LH00941:114:22FVMWLT1:2:1152:12723:19895/151‑5 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcggg < LH00941:114:22FVMWLT1:2:1101:8451:5323/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcggg < LH00941:114:22FVMWLT1:2:1256:49962:4683/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcggg < LH00941:114:22FVMWLT1:2:1227:41530:7853/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcggg < LH00941:114:22FVMWLT1:2:1144:33524:27869/151‑7 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGNTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCACGGCACCGGCTTTGCCGGTGTT‑‑Ttcgggaacacc > LH00941:114:22FVMWLT1:2:2249:5059:5436/1‑140 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑G‑CC < LH00941:114:22FVMWLT1:2:1243:21247:10255/151‑1 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAAAAGGCGCCGCGGGGCATGGCCCCGGATTTGTCGGTGTT‑‑TGCGGGCAC‑G‑CC > LH00941:114:22FVMWLT1:2:1262:6168:16324/1‑151 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCAAAACAAGCGCCAAGGTGCCTGGCACCGGATTTGCCGGTGTTC‑G‑CGGGCAC‑G‑CC > LH00941:114:22FVMWLT1:2:1262:6177:16340/1‑151 (MQ=60)
GCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCATGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcgggcacgcccg > LH00941:114:22FVMWLT1:2:2164:1416:20808/1‑137 (MQ=60)
GCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGTCCGCGAAACAGGCGCCGCGGTGCCTGGCACCGGCTTTGCCGGTGTTcgcgggcacgccca > LH00941:114:22FVMWLT1:2:2268:6270:15604/1‑137 (MQ=60)
CCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGAGAAAAAGGCGCCGAGGTGCATGGGAACGGCTTTGCCGGTGTT‑‑TGCGGGGAC‑GACCGCTCCCAC > LH00941:114:22FVMWLT1:2:2162:35243:23226/1‑151 (MQ=60)
GCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAATGACCGTGAAACAGGCGCCGCGGTGCCCGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGAAC‑GCCCGCTCCCCCAGGCTGATTGC > LH00941:114:22FVMWLT1:2:1265:40559:8478/1‑151 (MQ=60)
ATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGCCCACGAAACAGGAGCCGCGGTGCATGGCACCGGCTTTGCCAGTGTTcgcgggcacaaccgctcccacaggactattgaaat > LH00941:114:22FVMWLT1:2:2261:29133:25259/1‑116 (MQ=60)
ATTAAGAGCCGGAACGAAGCTTTGGCACCACAGCAGGACGGAGGTTACAAAACGGGGGGAGCGGGGGTGCTCGCGAAACAGGCGCTGCGTTGCGGGGCACCGGTTTGGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCAT < LH00941:114:22FVMWLT1:2:1246:5743:14243/151‑1 (MQ=2)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACCGGCGCCACGGTTCATGGCACCAGCTTTGCCGGTGTTctcaggtacacccccttccacagactgattggcatt > LH00941:114:22FVMWLT1:2:2158:44498:29551/1‑115 (MQ=60)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAAGAGCCGCGGTGTATGGCACCGGCTTTTCCGGTGTTC‑G‑CGGGCAC‑GCCCACTCCCACAAACTGATTGCCACT > LH00941:114:22FVMWLT1:2:2155:42307:9967/1‑151 (MQ=59)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCGCGAAACAAGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCCCAGAATGATTGCCATT > LH00941:114:22FVMWLT1:2:2248:25740:17653/1‑151 (MQ=60)
TGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCAAAACAAGAGCCACGGTGCATGGCACCAGGTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCTCTCCCCCAGAATGATTGCCATTAAGAGGGCCTCTCGCTAaagg > LH00941:114:22FVMWLT1:2:1250:17530:2537/1‑147 (MQ=44)
TGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCGCGAAACAAGCACCACGGTGCATGGCACCGGCGTTTCCGGTTTT‑‑TGCGGGCAC‑GCCCGCTCCCACAGACCGATTGCCATTAAaacgggccaacgctgcaat > LH00941:114:22FVMWLT1:2:1128:38673:16901/1‑132 (MQ=60)
GACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGCCCACAAAACAAGCGCCGCGGTGTACGGCACCGGCTTTGCCGGTGTT‑‑Ttcgggaacgcccagtcccacagaacgagtgccattgaaggggactatcactacaaggacagaacattttt > LH00941:114:22FVMWLT1:2:2126:43582:12753/1‑81 (MQ=31)
GACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACCAGCGCCGCGGTGCATGGCACCAGCTTTGCCTGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCCCAGACTGATTGCCATTCAGCGGGGCTCCCGCTACAGTGAAGGCCCGTTTTT > LH00941:114:22FVMWLT1:2:2269:24113:8878/1‑151 (MQ=26)
tgtttcGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAA > LH00941:114:22FVMWLT1:2:2267:16994:2025/7‑151 (MQ=60)
tgtttcGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCACGTTTTTTGTTGCCTCGCTAACGAA > LH00941:114:22FVMWLT1:2:2267:16985:2009/7‑151 (MQ=60)
GGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTC > LH00941:114:22FVMWLT1:2:1149:23817:17173/1‑151 (MQ=60)
CGTGAAACAGGCGCCGTGGGGCGTGGCACCGGCTTTGCTGGTGTT‑‑TGCGGGCACTC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:2235:2488:26669/151‑1 (MQ=60)
CGCGAAACAGGCGCCGTGGTGCGTGGCACCGTTTTTGCCGGTGTTCGT‑‑GGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:2222:5789:9807/151‑1 (MQ=60)
GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAG > LH00941:114:22FVMWLT1:2:2113:21284:24763/1‑151 (MQ=60)
gagacaGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGC < LH00941:114:22FVMWLT1:2:1152:15921:5355/145‑1 (MQ=60)
CCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAG > LH00941:114:22FVMWLT1:2:1266:23807:26412/1‑151 (MQ=60)
CCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAG > LH00941:114:22FVMWLT1:2:2123:49296:14931/1‑151 (MQ=60)
GCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAT > LH00941:114:22FVMWLT1:2:1255:18797:2617/1‑151 (MQ=60)
GCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAT > LH00941:114:22FVMWLT1:2:2206:32572:26348/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACtgtctcttatacacatc > LH00941:114:22FVMWLT1:2:2208:4079:29327/1‑134 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2168:24529:12417/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2170:35595:6989/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2207:18556:9247/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2211:18593:24523/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2157:1786:18694/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2222:6029:22873/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2150:47475:5371/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2226:20304:15059/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2133:11280:13426/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2133:11271:13442/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2261:5133:20840/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1103:10032:26637/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1125:31481:18502/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1222:11650:13266/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1246:18334:8958/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1257:5539:9567/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1270:40661:21721/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1270:40670:21737/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1270:40661:21753/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCAACAGACTGATTGCCATTACGCGGGCCTATCGATACAGTGACGACCCGTTTTTTGTTGCCTCGCTAACGAATCATGAATCCCTTAGAACGCTATCAAGCATATCTG > LH00941:114:22FVMWLT1:2:1138:36288:2361/1‑151 (MQ=60)
GCNTGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1107:42723:1112/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2116:49472:14435/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1126:50581:21897/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2259:28606:2409/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2259:28596:2393/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1205:46707:1833/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2151:6039:14819/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1215:25601:16997/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1230:24676:6460/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2116:29317:27853/1‑151 (MQ=60)
cgtggcacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAA < LH00941:114:22FVMWLT1:2:1133:18732:3626/143‑1 (MQ=60)
catgacatCGGCTTTGCCGGTTTTC‑T‑CGGGCACTC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAA < LH00941:114:22FVMWLT1:2:2243:9875:21016/143‑1 (MQ=60)
TGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG > LH00941:114:22FVMWLT1:2:2120:22615:24699/1‑151 (MQ=60)
TGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG > LH00941:114:22FVMWLT1:2:1211:49841:27437/1‑151 (MQ=60)
aacacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGT > LH00941:114:22FVMWLT1:2:2234:50026:4507/6‑151 (MQ=60)
aacacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGT > LH00941:114:22FVMWLT1:2:2115:44063:2089/6‑151 (MQ=60)
gcacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:2268:20220:13794/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:1206:50599:17349/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:2259:31148:8862/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:1248:5539:8158/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:1248:5530:8174/5‑151 (MQ=60)
acacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:1254:49610:29311/5‑151 (MQ=60)
acacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:1254:49601:29295/5‑151 (MQ=60)
cacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCC > LH00941:114:22FVMWLT1:2:2226:19804:20472/4‑151 (MQ=60)
cacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCC > LH00941:114:22FVMWLT1:2:2134:16624:12465/4‑151 (MQ=60)
cacCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCC > LH00941:114:22FVMWLT1:2:2245:38738:5003/4‑151 (MQ=60)
CGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGA > LH00941:114:22FVMWLT1:2:2241:15681:9423/1‑151 (MQ=60)
GGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAC > LH00941:114:22FVMWLT1:2:1153:47456:5371/1‑151 (MQ=60)
GGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAC > LH00941:114:22FVMWLT1:2:2124:16005:24299/1‑151 (MQ=60)
GGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAC > LH00941:114:22FVMWLT1:2:1244:51228:28014/1‑151 (MQ=60)
GGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAC > LH00941:114:22FVMWLT1:2:1120:49647:4587/1‑151 (MQ=60)
GCTTTGCCGGTGTTC‑G‑CGGGCAT‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACT > LH00941:114:22FVMWLT1:2:2210:25139:10688/1‑151 (MQ=60)
CTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTT > LH00941:114:22FVMWLT1:2:2242:41160:7117/1‑151 (MQ=60)
TTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCACGCAGATCTGAAACGTACCGACTTCT > LH00941:114:22FVMWLT1:2:2116:2165:25243/1‑151 (MQ=60)
TTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCT > LH00941:114:22FVMWLT1:2:2168:46864:23402/1‑151 (MQ=60)
TTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCT > LH00941:114:22FVMWLT1:2:1232:23012:23178/1‑151 (MQ=60)
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GCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑‑T‑CGGGCAC‑G‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCT > AE015451_phaM1/1499348‑1499635
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
