Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F42 I4 R1
|
76 |
794.2 |
35354760 |
99.3% |
35107276 |
136.2 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTG‑TT‑‑T‑CG‑‑GGCA‑C‑G‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTC > AE015451_phaM1/1499349‑1499637
|
CAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTTCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcg > LH00941:114:22FVMWLT1:2:2254:32729:29086/1‑149 (MQ=60)
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTNCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcg < LH00941:114:22FVMWLT1:2:2261:49102:5948/151‑5 (MQ=60)
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcg < LH00941:114:22FVMWLT1:2:1256:6954:18614/151‑5 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:2220:12575:14579/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:2220:12565:14563/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:1169:24214:3514/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATGCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTcgcggg < LH00941:114:22FVMWLT1:2:1169:24196:3514/151‑7 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGCCCGCGAAACAAGCGCCACGGTGCACGGCACCAGCTTTGCCGGTG‑TTcgcgggcacacc > LH00941:114:22FVMWLT1:2:1129:40670:26444/1‑139 (MQ=60)
CCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGAGCCACGGTGCACGGCACCGGATTTGCCAGTG‑TTC‑T‑CG‑‑GGCA‑C‑G‑CCctccccccc > LH00941:114:22FVMWLT1:2:2257:31934:5548/1‑142 (MQ=60)
CGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTTCCCGCGAAACAAGCGCCGCGGTGTATGGCACCGGATTTTCCGGTG‑TTC‑T‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGAATGATT > LH00941:114:22FVMWLT1:2:1242:25287:11681/1‑151 (MQ=60)
ATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑‑T‑‑T‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTA > LH00941:114:22FVMWLT1:2:2250:2442:8654/1‑151 (MQ=60)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGTCCGCGAAAAAAGCGCCGCAGTGCATGGCCCCAGCTTTTCCGGTG‑TTC‑T‑CG‑‑GGCA‑Cacccactcccacaaaatgatttccatt > LH00941:114:22FVMWLT1:2:2204:24880:18438/1‑124 (MQ=60)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGTGCCACGGTGCCTGGCACCAGCTTTGCCGGTG‑TTC‑T‑CG‑‑GGCA‑CAC‑CC‑GCTTCCACAGAATGATTGACATT > LH00941:114:22FVMWLT1:2:2168:3755:10800/1‑151 (MQ=60)
GCATGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGGGCCGAGGTGTATTGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGAATGAGTGACATTCAGCGG > LH00941:114:22FVMWLT1:2:1167:48898:28334/1‑151 (MQ=48)
gcacaacagaaggatggggtctacaaaagggggggggagggggtgcctgagaaaaggttaccggggtgcaggacactggtTTTGCCGGTG‑TT‑‑TGCG‑‑GGCACC‑C‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGA < LH00941:114:22FVMWLT1:2:1124:9644:26220/71‑1 (MQ=60)
gcacaaaagaaggattggggcgacaaaagggggggggtgggtgtgcccgaaaaaagggcgccgtggggcgtggcaccggtTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGA < LH00941:114:22FVMWLT1:2:1145:40162:17141/71‑1 (MQ=23)
CACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGTCCGCGAAAAAAGCGCCGCGGTGCACGGAACCGGCTTTGTCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCCCCCAAAGAATGACTGCCATTCAGCGGGTCTATCGCTCCAATGAC > LH00941:114:22FVMWLT1:2:2152:47807:21160/1‑151 (MQ=25)
ACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑G‑CCTGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCC < LH00941:114:22FVMWLT1:2:2121:41096:3546/151‑1 (MQ=60)
GGACTGAGGCTGCCAAACGGTGGGAGCGGGTGTGTCCTCGAAACAGGCGCCTCGGTGCATGGCCCCGGGTTTTTCGGTGTTT‑‑T‑CG‑‑GGCA‑CAC‑CC‑GCTCCCAAAGAATGGTTGCCATTCAGCGGGCCcgtttctccaattacggcccctttt > LH00941:114:22FVMWLT1:2:1254:51533:16116/1‑126 (MQ=35)
GACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAAAAAGCACCGCGGTGCATGGCACCGGATTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTTCCACAGAATGAGTGTAATTCAACGGGCCTATCGCTCCAGTGGCGGCCCG‑TTTTT > LH00941:114:22FVMWLT1:2:2229:48316:25884/1‑151 (MQ=1)
gggctgccaaatggggggagtgggtttgcctgggaaaagggtgccgcggtgcggggcactggtTTTGCCGGTG‑TT‑‑TGTG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTG < LH00941:114:22FVMWLT1:2:2125:4199:13042/88‑1 (MQ=60)
GGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTC > LH00941:114:22FVMWLT1:2:2160:45561:10544/1‑151 (MQ=60)
GGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTC > LH00941:114:22FVMWLT1:2:1242:26729:7613/1‑151 (MQ=60)
GTGCCCGAGAAACGGGCGCCGTGGTGCAGGGCACTGGTTTTGCCGGTG‑TT‑‑TGCG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCT < LH00941:114:22FVMWLT1:2:2163:48713:16516/151‑1 (MQ=60)
CCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAG > LH00941:114:22FVMWLT1:2:1117:4615:26124/1‑151 (MQ=60)
cgtgggctcggagatgtgtataagagacagGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:2231:30686:1464/121‑1 (MQ=60)
cacgaaaaaggcgccgtggggcgtggcactgtcttttCCGGTG‑TT‑‑TGCG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:1240:3219:27773/114‑1 (MQ=60)
CGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTTCCGGTG‑TTCGT‑‑G‑‑GGCA‑CTC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:1240:20341:9167/151‑1 (MQ=60)
CGCGAAACAGGCGCCGCGGTGAATGGCACTGGTTTTGCCGGTG‑TTC‑G‑CG‑‑GACACC‑C‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:1150:40384:11921/151‑1 (MQ=60)
GCGAAACAGTCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GACA‑CAC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAAC < LH00941:114:22FVMWLT1:2:1260:40310:18806/151‑1 (MQ=60)
acgggcgccgcgggaaatgacaccggtTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTAT < LH00941:114:22FVMWLT1:2:1157:48020:18550/124‑1 (MQ=60)
ggcaaagcCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCA > LH00941:114:22FVMWLT1:2:2242:17946:17861/9‑151 (MQ=60)
GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAG > LH00941:114:22FVMWLT1:2:1132:40772:9391/1‑151 (MQ=60)
GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAG > LH00941:114:22FVMWLT1:2:1148:20997:12257/1‑151 (MQ=60)
CCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAG > LH00941:114:22FVMWLT1:2:1139:19324:8558/1‑151 (MQ=60)
GCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAT > LH00941:114:22FVMWLT1:2:2168:34485:11536/1‑151 (MQ=60)
CCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAT > LH00941:114:22FVMWLT1:2:2257:1351:5420/1‑151 (MQ=60)
cccgcgaacacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2230:27792:26140/12‑151 (MQ=60)
cccgcgaacacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1155:21348:9215/12‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGCCCGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1215:6492:8302/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2123:49333:15828/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2128:44387:8702/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2123:49324:15844/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2227:37259:19223/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1239:37046:28334/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2130:9330:19975/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2131:9663:17926/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2159:49000:22777/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2121:23327:11488/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2115:14174:28046/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2114:18602:14066/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2219:1222:22906/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2213:10735:28590/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1258:45663:3162/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1146:36750:18598/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1157:37046:8734/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1239:37037:28350/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2238:1139:26701/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1221:40809:1448/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2208:48325:23594/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2112:9921:22665/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1211:17327:3626/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1201:11928:21624/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1169:49832:12401/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1166:33820:6316/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1159:3228:25868/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1219:12344:18982/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1246:1545:7037/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2169:8230:28574/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2169:8220:28558/1‑151 (MQ=60)
CATGGCACCGGCTTTGCCGTTG‑TTC‑T‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAA < LH00941:114:22FVMWLT1:2:2264:10217:27757/151‑1 (MQ=60)
CATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAA < LH00941:114:22FVMWLT1:2:2104:51089:7853/151‑1 (MQ=60)
ATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCACC‑C‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAA < LH00941:114:22FVMWLT1:2:2229:6686:17381/151‑1 (MQ=60)
TGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG > LH00941:114:22FVMWLT1:2:2247:32849:20103/1‑151 (MQ=60)
TGGCACCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG > LH00941:114:22FVMWLT1:2:1124:24057:10928/1‑151 (MQ=60)
TGGCACCGGCTTTGCCGGTG‑‑T‑‑T‑CGCAGGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTCAGCGGGCCTATCGCTACCGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG > LH00941:114:22FVMWLT1:2:1240:42713:4459/1‑151 (MQ=60)
ggcacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGT > LH00941:114:22FVMWLT1:2:1112:44664:8478/6‑151 (MQ=60)
ggcacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGT > LH00941:114:22FVMWLT1:2:1112:44673:8462/6‑151 (MQ=60)
ggcacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGT > LH00941:114:22FVMWLT1:2:1235:23151:18006/6‑151 (MQ=60)
ggcacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCATCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGT > LH00941:114:22FVMWLT1:2:1235:23133:18006/6‑151 (MQ=60)
gcacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:2151:9163:18982/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:1114:9875:29215/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:1267:3330:22169/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:2231:29863:6957/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:1270:40846:12401/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:2224:3561:7037/5‑151 (MQ=60)
gcacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTC > LH00941:114:22FVMWLT1:2:2151:9173:18998/5‑151 (MQ=60)
cacCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCC > LH00941:114:22FVMWLT1:2:1202:28125:10640/4‑151 (MQ=60)
CCGGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCG > LH00941:114:22FVMWLT1:2:1104:28929:5660/1‑151 (MQ=60)
GGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAC > LH00941:114:22FVMWLT1:2:2123:49693:16933/1‑151 (MQ=60)
GGCTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCATTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAC > LH00941:114:22FVMWLT1:2:1204:2969:19815/1‑151 (MQ=60)
CTTTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTT > LH00941:114:22FVMWLT1:2:2253:45284:19062/1‑151 (MQ=60)
TTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCT > LH00941:114:22FVMWLT1:2:2104:14507:29006/1‑151 (MQ=60)
TTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCT > LH00941:114:22FVMWLT1:2:1219:24418:27950/1‑151 (MQ=60)
TTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCT > LH00941:114:22FVMWLT1:2:1204:46254:15235/1‑151 (MQ=60)
TTGCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCT > LH00941:114:22FVMWLT1:2:2260:18861:6348/1‑151 (MQ=60)
GCCGGTG‑TTC‑G‑CG‑‑GGCA‑C‑GCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTC > LH00941:114:22FVMWLT1:2:2129:45043:11088/1‑151 (MQ=60)
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CAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTG‑TT‑‑T‑CG‑‑GGCA‑C‑G‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCG‑TTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTC > AE015451_phaM1/1499349‑1499637
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
