Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F73 I2 R1
|
76 |
833.2 |
37290668 |
99.4% |
37066923 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AE015451_phaM1 |
1,499,480 |
2 bp→AC |
intergenic (+57/‑106) |
trpS CDS (Tryptophan‑‑tRNA ligase) → / → zapE CDS (putative enzyme with nucleoside triphosphate hydrolase domain) |
–/– |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AE015451_phaM1 | 1,499,480 | 0 | C | A | 95.1%
| 314.5
/ ‑3.9
| 144 | intergenic (+57/‑107) | trpS CDS (Tryptophan‑‑tRNA ligase)/zapE CDS (putative enzyme with nucleoside triphosphate hydrolase domain) | –/– |
| Reads supporting (aligned to +/- strand): ref base C (6/1); new base A (67/70); total (73/71) |
| Fisher's exact test for biased strand distribution p-value = 1.16e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| * | AE015451_phaM1 | 1,499,481 | 0 | A | C | 96.5%
| 349.5
/ ‑5.5
| 144 | intergenic (+58/‑106) | trpS CDS (Tryptophan‑‑tRNA ligase)/zapE CDS (putative enzyme with nucleoside triphosphate hydrolase domain) | –/– |
| Reads supporting (aligned to +/- strand): ref base A (4/1); new base C (69/70); total (73/71) |
| Fisher's exact test for biased strand distribution p-value = 3.66e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 144 total aligned reads displayed.
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑CACGGCTT‑TGCCGGT‑G‑T‑T‑T‑CG‑GGC‑A‑C‑G‑C‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATC > AE015451_phaM1/1499351‑1499608
||
gTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACATGCGCCGCGGTGCATGGC‑ACCGGCtt < 1:2130891/137‑1 (MQ=255)
ttCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCGGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCtt‑t < 1:10442525/137‑1 (MQ=255)
tCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑Tg < 1:9536/137‑1 (MQ=255)
tCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑Tg < 1:8354360/137‑1 (MQ=255)
tCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑Tg < 1:5154432/137‑1 (MQ=255)
tCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑Tg < 1:2913308/137‑1 (MQ=255)
tCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑Tg < 2:2736040/137‑1 (MQ=255)
cGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGTGTGCCCGCGAAAAAAGCGCCGCGGTGTACGGC‑ACCTGTTT‑TGCCGgt‑gg > 2:2864049/1‑136 (MQ=255)
tGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGTCCCCGAAACAAGCGCCGCGGTGCCTTGC‑CCCGGCTC‑TTCCGGT‑G‑t‑t‑tg > 1:11151487/1‑136 (MQ=255)
tGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGATT‑TGCCGGT‑G‑t‑tcg > 2:6187724/1‑135 (MQ=255)
gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGCCCCCGAAACAAGAGCCACTGTGCACGGC‑ACCAGACT‑TTTCGGT‑G‑T‑T‑TGCG‑GGA‑A‑c‑g‑c‑c > 1:10365934/1‑137 (MQ=255)
gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑c‑g‑c‑c > 2:4007115/1‑137 (MQ=25)
gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAAAAGGCGCCGCGGGGCATGGC‑CCCGGATT‑TGTCGGT‑G‑T‑T‑TGCG‑GGC‑A‑c‑g‑c‑c > 1:8788177/1‑137 (MQ=37)
gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCAAAACAGGGGCCGCGGTGCATGGC‑ACCGGCTT‑TGTCGGT‑G‑T‑TCG‑CA‑GGC‑A‑c‑g‑c‑c > 2:5692553/1‑137 (MQ=25)
gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCAAAACAAGCGCCAAGGTGCCTGGC‑ACCGGATT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑c‑g‑c‑c > 1:8788219/1‑137 (MQ=25)
gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCACAAAACAAGCGCCGCTGTGCATGGC‑ACCAGCTT‑TTCCCGT‑G‑T‑TCG‑CG‑GGC‑A‑c‑g‑c‑c > 1:14698481/1‑137 (MQ=25)
gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGTCCGCGAAACAAGCGACACGGTGTATGGA‑ACCTGACT‑TGTCGGT‑G‑T‑TCG‑CG‑GGC‑A‑c‑g‑c‑c > 1:6920361/1‑137 (MQ=255)
gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGTCCACGAAACAAGCGCCACGGTGCCTTGCACCCGCCTT‑TCCCGTT‑T‑T‑C‑T‑CG‑GGcccacc > 1:7926179/1‑132 (MQ=255)
aTGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCACGAAAAAAGCGCCACGGTGCCTGGC‑ACCAGCTT‑TTCCGGT‑G‑T‑T‑TGCG‑GGG‑A‑c‑g‑c‑cc > 1:3409503/1‑136 (MQ=255)
tGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGTGTGCCCACAAAACAGGCGTCGCGGTGTATGGC‑ACCGGCTT‑TGCCTTT‑GTT‑T‑T‑CG‑GGT‑A‑c‑g‑c‑cca > 1:1574440/1‑135 (MQ=255)
tGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGAGCCACGGTGCACGGC‑CCCAGACT‑TTTCGGT‑G‑T‑T‑TGCG‑GGG‑A‑c‑g‑c‑ccg > 1:2876421/1‑135 (MQ=255)
tGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGTCCGCGAAACAGGCGCCGCGGTGCCTGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑c‑g‑c‑cca > 1:18477335/1‑135 (MQ=37)
aTTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑A‑GCC‑CGCTCCcac > 2:16161304/1‑137 (MQ=18)
aTTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGAGAAAAAGGCGCCGAGGTGCATGGG‑AACGGCTT‑TGCCGGT‑G‑T‑T‑TGCG‑GGG‑A‑C‑GAC‑CGCTCCcac > 1:13416872/1‑137 (MQ=25)
agggCCTGAACGAAGCCTTGGCACCACAACATGATTGAGGCTGCCAAACGGTGGGAGCGGGTGGGCCCGCGAAACGGGCGCCGCGGTGCATGGC‑ACTGGTTT‑TGCCGGT‑G‑T‑TCG‑TG‑GGA‑A‑C‑GCC‑CGCTCCCACAGAc < 2:12209045/134‑1 (MQ=255)
gagCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCACGAAAAAGGCGCCGCGGTGCATGGC‑AACGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACt > 2:12727240/1‑137 (MQ=25)
aagCCTGAACAAAACCTTGGCACCAAGGAAGGACGGAGGCTGCAAAACGGGGGGAGCGGGCGTGCCCGCGAAACAGACACCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GAC‑A‑C‑GCC‑CGCTCCCACAGACt < 2:17107008/136‑1 (MQ=9)
gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCTCGAAACAAGCGCCGCGGTGCATGGC‑ACCGACTT‑TTCCGGT‑G‑T‑TCG‑CG‑GGC‑ACC‑C‑C‑CACTCCCACAAACTCATTGc > 2:16403143/1‑137 (MQ=255)
gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCACGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑T‑CGCG‑GGC‑A‑C‑GCC‑CGCTCCCACAGAATGATTGc > 2:8638097/1‑137 (MQ=21)
gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAAGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑T‑TGCG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGc > 2:17673899/1‑137 (MQ=21)
cGAAGCTTTGTCACCACAGCAGGGTTGAGGCTACCAAACGGTGGGGGCGGGCGTGCGCGCGAAACGGGCGCCGTTGTGCGTGGC‑ACCGGCTT‑TGCTGGT‑G‑T‑T‑TGCG‑GGC‑A‑T‑GCC‑CGCTCCCACAGACTGATTGCCAt < 2:15808892/137‑1 (MQ=16)
cGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCAAAACAGGTGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑ACC‑CGCTCCCAAAGACTGATTgtcct > 2:15640509/1‑133 (MQ=18)
gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACCGGCGCCACGGTTCATGGC‑ACCAGCTT‑TGCCGGT‑G‑T‑TCT‑CA‑GGT‑A‑C‑ACC‑CCCTTCCACAGACTGATTGGCAtt > 1:13167018/1‑137 (MQ=21)
gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCCTGGC‑ACCAGCTT‑TGCCGGT‑G‑T‑TCT‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCAtt > 2:16580361/1‑137 (MQ=21)
gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCT‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCAtt > 2:15614547/1‑137 (MQ=25)
gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGAATGATTGCCAtt > 2:9156560/1‑137 (MQ=21)
gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCACGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGATGCCACAGAACGATTGCCAtt > 2:1205746/1‑137 (MQ=18)
gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCACGAAACAAGCGCCGAGGTGTATGGC‑ACCTGATT‑TTCCGGT‑G‑T‑TCG‑CA‑GGCAA‑A‑C‑C‑CGCTCCCACAGAATGATTGCCCtt > 1:3845641/1‑137 (MQ=12)
gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCACGAAAAAAGAGCCACCGTTTCTGGC‑ACCCGATT‑TGCCTGT‑G‑T‑TCT‑CG‑GGA‑A‑CAC‑C‑CCCTCCCCCCAAATGATTGCCact > 1:5817128/1‑135 (MQ=255)
gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCGCGAAACAAGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCCCAGAATGATTGCCAtt > 1:17133334/1‑137 (MQ=18)
gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCGCAAAAAAAGAACCTCAGTGCATGGC‑ACCAGCTT‑TTCCAGT‑GTT‑T‑T‑CG‑GGC‑A‑CAC‑C‑CCCTCCCACCAACCTATTGcccct > 2:5433856/1‑134 (MQ=255)
aaaGCTTTGGCACCACAGCAGGATGGGGGCTGCAAAATGGTGGGAGGGGTCGGCCCTGCAAAACGGGCGCCGTGGGGAATGGC‑ACTGGTTT‑TGCTGGT‑G‑T‑TCG‑TG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCAtt < 1:12792947/136‑1 (MQ=12)
ccTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCACGGTGCCTGGC‑ACCAGCTT‑TGCCGGT‑G‑T‑TCA‑CG‑GGC‑A‑C‑GCC‑CACTCCCACAGACTGATTGCCATTAAGc > 2:12269267/1‑137 (MQ=21)
ccTTGGCACCACAGAAGGGTTGAGTCGGCAAAATGGTGGGAGCGGGTGGGCCCGCGAAAAAGACACCGCGGGGCAGGGA‑ACCGGCTT‑TGCTGGTGG‑T‑C‑G‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGc < 2:11044341/137‑1 (MQ=9)
ttGGCACCACAGAAGGATTGGGGTTGCAAAACGGGGGGAGCGGGCGTGCCCGCGAAAAGGGCGCCGGGGGGCAGGGC‑ACTGGTTT‑TGCAGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCgg < 2:6735418/137‑1 (MQ=12)
ttGACACCACAGAAGAACTGAGGCTGCCAAACGGTGGGAGCGGGCTTTCCTAAGAAAAAGTCGCCGTGGGACAGGAC‑ACCGGTTT‑TCCCGGT‑G‑T‑T‑CGCG‑GAC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCgg < 2:77658/137‑1 (MQ=255)
ggCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGTCCACGAAACAGGCGCCACGGTGTATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCCCCAACTGATTTCCATTCAACGGGc > 2:10027655/1‑137 (MQ=17)
gCACCACGGCGGGATTGAGGTGACCAAATGGTGGGAGGGGTTGTGCCCGCGAAACAGGAGCCAAGTGGCATGGA‑ACTGGTTT‑TTCCGGT‑T‑T‑TCG‑CG‑GGC‑A‑C‑ACC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 2:14700943/137‑1 (MQ=255)
gCACCACAGCAGGGCTGAGGCTGCCAAACGTTGGGAGCGGGCGGCCCCGCGAAACAGGCCCCAAGGGGCAGGGC‑ACTGGCTT‑TGCCGGT‑G‑T‑T‑TGCG‑GGC‑A‑C‑ACC‑CGCTCCCGCAGACTGATTGCCATTAAGCGGGcc < 2:3931265/137‑1 (MQ=255)
gCACCACAGCAGGACTGAGTCTCCCAAACGGTGGGAGCGGGTGTGCCCGCGAAACGGGCGCCGCGGTGCAGGAA‑ACCGGCTT‑GGCCGTT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 2:2851360/137‑1 (MQ=18)
gCACCACAGCAGGACGGAGGCTGCCAAATGGTGGGAGCGGGTGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGTTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 2:8857660/137‑1 (MQ=21)
gCACCACAGAAGGATTGAGGCGGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAAAAGGCGCAGCGGGGCATGGC‑ACCGGCTT‑TGCCGTT‑G‑T‑T‑CGCG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 2:8853627/137‑1 (MQ=18)
gCACCACAGAAGGATGGGGGTTGCAAAATGGGGGGAGGGGGTGTCCCCGAAAAACAGGCGCCGCGGTGAAGGGC‑ACTGGTTT‑TGCTGGT‑G‑T‑T‑CGCG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 2:1483340/137‑1 (MQ=12)
acaccacATCAGGACTGAGGCGGCAAAATGGGGGGAGCGGGTGTGCCAGAGAAACAGGCACAGCGGGACATGGC‑ACCGGTTT‑TGCCGGT‑T‑T‑TCG‑CG‑GGA‑A‑C‑CCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 2:9717769/136‑1 (MQ=255)
caccacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCCTGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGAATGATTGCCATTAAGCGGGCCt > 2:15651896/1‑137 (MQ=21)
acaGCAGGACTGAGGCTGCCAAATGGTGGGAGCGGGTGTGCCCGCGAAACAGGCGCCGTGGGGCATGGC‑ACTGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCg < 2:16224513/137‑1 (MQ=21)
gcagGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCGCGAAACAAGCACCACGGTGCCCGGC‑ACCCGCTT‑TTCCGGT‑G‑T‑TCT‑CG‑GGC‑A‑CAC‑C‑CCCCCCCCCAAAATGATTGCCACTCCACGGGACTATCACtc > 1:11976457/1‑136 (MQ=255)
gACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGCCCACGAAACAAGTACCACGGTGCATGGC‑ACCAGGTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑CAC‑C‑CACCCCCCCAGACCGAGTGCCCTTCAGCGGGACTATCGCTaaaat > 1:1816872/1‑133 (MQ=9)
gAGGCTGACAAATGGTGGGAGCGGGTGTGCCCGCGAAAAAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACg < 2:16166808/137‑1 (MQ=18)
cTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCCTGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCAAAGAATGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGccc > 2:17849984/1‑137 (MQ=21)
cTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑T‑TGCG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCCTTCAGCGGGCCTATCGCTACAGTGACGGccc > 2:7075035/1‑137 (MQ=21)
cTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑T‑CGCG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGtcc > 2:12217738/1‑137 (MQ=21)
cTGCCAAACGGTGGGAGCGGGAGTGCCCGCAAAACAAGAGCCGCAGTTCCTGGC‑CCCAGCTT‑TTCCCGT‑GTT‑T‑T‑TG‑GGC‑A‑CAC‑C‑CGCTCCCCCAAAACGATTGCCATTCAGCGGGTCTATCCCTCCAATGACGGacc > 2:941820/1‑137 (MQ=255)
cTGCCAAACGGTGGGAGCGGGAGTGCCCACGAAACAAGCGCCACGGTGCATGGC‑ACCGGATT‑TGTCGGT‑G‑T‑TCT‑CG‑GGC‑A‑C‑GCC‑CACTCCCACAAAACGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGccc > 2:2668583/1‑137 (MQ=255)
gaaCGGTGGGAGTGGGTGTGGCCGAGGAAAAGGCGCCGCGGTGCATGGA‑ACCGGATT‑TGAAGGT‑G‑T‑TCG‑CG‑GGC‑A‑A‑G‑CACGCTCCCACAAACTTATTGCCATTAAGTGGGCCTATCACTACAGTGACAGCCCGtttt > 2:15439402/2‑137 (MQ=255)
aaaCGGTGGGAGCGGGCGTTCCCGCGAAACAGGCGCCACAGTGCACGGC‑ACCGGCTT‑TGCCTGT‑G‑T‑TCA‑CG‑GGC‑A‑C‑GCC‑CGCCCCCCCCGACTGATTGCCCTTCAACAGGCCTATCGCTACAGTGACGGCCCGtttt > 2:8547585/1‑137 (MQ=255)
aaaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑T‑CGCG‑GGC‑A‑C‑GCC‑CGATCCCACAGACTGATTGCCATTAAGCGGGCCTCTCGCTACAGTTCCGGCCCGtttt > 2:17127893/1‑137 (MQ=18)
aaaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCACGGC‑ACCAGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑CAC‑C‑CGCTCCCACAGACTGATTGCCACTAAGCGGGAATATCGATACAGTGACGGAACGtttt > 2:8547538/1‑137 (MQ=17)
ggggtgggTGTGCCTGAGAAACGGGCGCTGTGGTGCAGGGC‑ACTGGTTT‑GGTTGGT‑G‑T‑TAG‑TG‑GAC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGcc < 1:7834872/132‑1 (MQ=255)
aGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑CAC‑C‑CGCTCCCACAGACCGATTGCCATTAAGCGGGCCTATCGCTAAAATGACGGCCCGTTTTTTGTTGCCTc > 2:18046116/1‑137 (MQ=18)
gCGGGCGTGCCCACGAAACAAGCGCCGCGGTGCACGGC‑ACCGGATT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAAACTGATTGCCATTCAGCGGGCCTACCGCTACAGTGACGGCCCGTTTTTTTTTGCCTCg > 2:4021771/1‑137 (MQ=18)
tggttgTGCCCGCAAAACGGGCGCCGTGTTGCATGGC‑ACTGTTTT‑TTTCGGT‑G‑T‑TCG‑TG‑GAC‑A‑C‑CCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGc < 1:7107358/132‑1 (MQ=255)
cGGGCATTCCCGCAAAACAGGCGCCGCGGCGCATGGC‑ACCTACTT‑TACCGGT‑G‑T‑TCG‑CG‑GGC‑A‑CTC‑C‑CACTCCCACAGACTGATTACCATTAAACGGGCCTATCGCTACACTGACGGCCCGTTTTTTGTTGCCTCGc < 2:15756961/137‑1 (MQ=255)
gggcgggcCCACGAAACAGGCACCGCGGTGCGTGG‑‑CACCGTTTGTACTGTT‑G‑T‑TCG‑TG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCt < 1:3975625/137‑1 (MQ=255)
gCCCGCGAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGaa > 1:18377998/1‑137 (MQ=25)
cgtgAAACGGGCGCCGGGGTGCATGGC‑ACCGGTTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑ACC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:6299534/134‑1 (MQ=25)
cgtgAAACAGGCGCCGTGGGGCGTGGC‑ACCGGCTT‑TGCTGGT‑G‑T‑T‑TGCG‑GGC‑A‑C‑TCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 1:16280599/134‑1 (MQ=255)
cgtgAAACAGGCGCCGAGGTGCCTTGC‑ACCGGCTG‑TGCTGGT‑G‑T‑T‑C‑GGTGGC‑A‑C‑GCC‑CGCTCTCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:4228083/134‑1 (MQ=255)
cgcgAAATAGGCGCCGTGGTGCGTGTA‑ACTGGCTT‑TGCTGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑CCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:1736802/137‑1 (MQ=255)
cgcgAAACGGGCTCCACGGTGCATGGC‑ACCGGCTT‑TACTGTT‑T‑T‑T‑CGTG‑GGC‑A‑C‑TCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 1:3391724/137‑1 (MQ=255)
cgcgAAACGGGCGCCGTGGGGCAGGAC‑ACCGGTTT‑TGTAGGT‑G‑T‑TCG‑CG‑GAC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:1746102/137‑1 (MQ=255)
cgcgAAACGGGCGCCGCGGTACGTGTC‑ACCGGCTT‑TTCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:11616370/137‑1 (MQ=25)
cgcgAAACAGGTGCCGCGGTACATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:6945442/137‑1 (MQ=37)
cgcgAAACAGGCGCCGTGGTGCGTGGC‑ACCGGCTT‑TTCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:11412587/137‑1 (MQ=25)
cgcgAAACAGGCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑T‑CGCG‑GAC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:2118104/137‑1 (MQ=25)
cgcgAAACAGCCCCCGTGGGGAATGGC‑ACTGGCTT‑TGCTGGT‑G‑T‑TCA‑GG‑GGC‑A‑T‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 1:8479008/137‑1 (MQ=255)
cgagAAACGGGCGCGGTGGTGCATGGC‑ACCGGTTT‑GGCGGGT‑T‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:4806553/134‑1 (MQ=25)
gcgAAACAGTCGCCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑T‑CGTG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt < 2:7635300/137‑1 (MQ=25)
gcgAAACAGGCGCCGTGTTCCGTGTC‑ACTGGCTT‑GGCTGTG‑G‑T‑T‑CGCG‑GGC‑A‑C‑TCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGCGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt < 2:14250331/137‑1 (MQ=255)
gcgAAACAGGCGCCACGGTGCATGGC‑ACCGGTTT‑TGCTGGT‑G‑T‑T‑CGCG‑GAC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt < 2:8053469/137‑1 (MQ=255)
acaaaaCAGGCGCCCCGATGCAGGGC‑ACCGCCTT‑TGCAGGT‑G‑T‑CCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTTACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt < 2:3343609/134‑1 (MQ=25)
gAAAAAGGCGCCGCGGTGCGTGGC‑ACCGGCTT‑TGCGGGG‑G‑T‑T‑CGCG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa < 2:17958142/137‑1 (MQ=37)
aataGGCGCCGCAGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGATACAGTGACGGCCAGTTGTTTGTTGCCTCGCTAACGAATCGTGCCt > 2:10389638/4‑137 (MQ=21)
aCAGGCGTCGCGGTGCATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTc > 2:3378910/1‑137 (MQ=25)
aCAGGCGCCGCGGTGCATGGC‑ACCGGGTT‑TGCCGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAAACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGAATc > 2:9215777/1‑137 (MQ=25)
cgctgtggTGCGTGGC‑ACCGGCTT‑TGCCGTT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 1:13832102/131‑1 (MQ=25)
cgccgtGGTGCATGGC‑ACCGGTTT‑GGCTGGT‑G‑T‑TCG‑CG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 2:7873477/137‑1 (MQ=37)
cgccgcGGTGCCTGGC‑ACCGGTTT‑TGCCGTT‑G‑TCC‑G‑TG‑GAC‑A‑C‑TCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 1:13987396/137‑1 (MQ=255)
cATGGC‑ACCGGCTT‑TGTCGGT‑G‑T‑TAG‑CG‑GGC‑A‑C‑TCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATc < 1:6980392/137‑1 (MQ=255)
cATGGC‑ACCGGCTT‑TGCCGGT‑G‑T‑C‑CGCG‑GGC‑A‑C‑GCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGAATCCCTTAGAACGCTATc < 2:12989992/137‑1 (MQ=37)
||
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGC‑CACGGCTT‑TGCCGGT‑G‑T‑T‑T‑CG‑GGC‑A‑C‑G‑C‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATC > AE015451_phaM1/1499351‑1499608
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑‑T‑CGGGCAC‑G‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG > AE015451_phaM1/1499335‑1499624
|
TTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGC < LH00941:114:22FVMWLT1:2:2145:36408:2729/151‑1 (MQ=60)
TTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGC < LH00941:114:22FVMWLT1:2:1108:51071:22489/151‑1 (MQ=60)
TTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGC < LH00941:114:22FVMWLT1:2:1123:51801:22281/151‑1 (MQ=60)
TTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGGGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGC < LH00941:114:22FVMWLT1:2:2145:36399:2713/151‑1 (MQ=60)
TGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCT < LH00941:114:22FVMWLT1:2:1270:11105:9951/151‑1 (MQ=60)
TGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCT < LH00941:114:22FVMWLT1:2:1122:41188:8062/151‑1 (MQ=60)
TGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCT < LH00941:114:22FVMWLT1:2:1122:41197:8046/151‑1 (MQ=60)
TGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCT < LH00941:114:22FVMWLT1:2:1216:40864:10512/151‑1 (MQ=60)
TGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCT < LH00941:114:22FVMWLT1:2:2259:15228:13506/151‑1 (MQ=60)
ACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGTGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCC < LH00941:114:22FVMWLT1:2:2170:28901:14739/151‑1 (MQ=60)
ACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCC < LH00941:114:22FVMWLT1:2:2114:6427:4283/151‑1 (MQ=60)
ACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCC < LH00941:114:22FVMWLT1:2:2147:34495:27373/151‑1 (MQ=60)
ACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCC < LH00941:114:22FVMWLT1:2:2210:41225:25323/151‑1 (MQ=60)
ACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATGCAGAGCCTGAACGAAGCCTTGGCACCACAGAAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCC < LH00941:114:22FVMWLT1:2:2102:26183:9327/151‑1 (MQ=60)
GCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG < LH00941:114:22FVMWLT1:2:1148:2165:19639/151‑1 (MQ=60)
GCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG < LH00941:114:22FVMWLT1:2:1101:13749:29519/151‑1 (MQ=60)
CCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGC < LH00941:114:22FVMWLT1:2:2263:15644:21208/151‑1 (MQ=60)
GCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑‑C < LH00941:114:22FVMWLT1:2:1151:19980:4859/151‑1 (MQ=60)
CAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTTCCCACGAAACAAGGGCCGCGGTGCATGGCAACGGATTTGTCGGTGgtcg > LH00941:114:22FVMWLT1:2:2128:20387:14435/1‑147 (MQ=60)
ttttGACAACGCTGAAGCCCGTGATGCGGCCATTCAGGGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGccatgc < LH00941:114:22FVMWLT1:2:1106:12260:29311/147‑7 (MQ=60)
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGTGTGCCCGCGAAACAGGGGCCGCGGTGCATGGCACCGGTTTTGCCGGTGTTC‑T‑CG > LH00941:114:22FVMWLT1:2:1170:17678:7469/1‑151 (MQ=60)
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACATGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcg < LH00941:114:22FVMWLT1:2:1133:33755:8126/151‑5 (MQ=60)
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGccatgc < LH00941:114:22FVMWLT1:2:1258:36529:6941/151‑7 (MQ=60)
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcg < LH00941:114:22FVMWLT1:2:1152:12723:19895/151‑5 (MQ=60)
TTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCGGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGccatgca < LH00941:114:22FVMWLT1:2:2117:50784:19879/151‑8 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGccatgcac < LH00941:114:22FVMWLT1:2:1208:11539:14291/151‑9 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcggg < LH00941:114:22FVMWLT1:2:1101:8451:5323/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcggg < LH00941:114:22FVMWLT1:2:1256:49962:4683/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcggg < LH00941:114:22FVMWLT1:2:1144:33524:27869/151‑7 (MQ=60)
TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcggg < LH00941:114:22FVMWLT1:2:1227:41530:7853/151‑7 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGNTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCACGGCACCGGCTTTGCCGGTGTT‑‑Ttcgggaacacc > LH00941:114:22FVMWLT1:2:2249:5059:5436/1‑140 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑G‑CC < LH00941:114:22FVMWLT1:2:1243:21247:10255/151‑1 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAAAAGGCGCCGCGGGGCATGGCCCCGGATTTGTCGGTGTT‑‑TGCGGGCAC‑G‑CC > LH00941:114:22FVMWLT1:2:1262:6168:16324/1‑151 (MQ=60)
ACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCAAAACAAGCGCCAAGGTGCCTGGCACCGGATTTGCCGGTGTTC‑G‑CGGGCAC‑G‑CC > LH00941:114:22FVMWLT1:2:1262:6177:16340/1‑151 (MQ=60)
GCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGTGTGCCCACAAAACAGGCGTCGCGGTGTATGGCACCGGCTTTGCCtttgttttcgggtacgccca > LH00941:114:22FVMWLT1:2:1124:40171:27245/1‑131 (MQ=60)
GCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCATGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcgggcacgcccg > LH00941:114:22FVMWLT1:2:2164:1416:20808/1‑137 (MQ=60)
GCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGTCCGCGAAACAGGCGCCGCGGTGCCTGGCACCGGCTTTGCCGGTGTTcgcgggcacgccca > LH00941:114:22FVMWLT1:2:2268:6270:15604/1‑137 (MQ=60)
CCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGAGAAAAAGGCGCCGAGGTGCATGGGAACGGCTTTGCCGGTGTT‑‑TGCGGGGAC‑GACCGCTCCCAC > LH00941:114:22FVMWLT1:2:2162:35243:23226/1‑151 (MQ=60)
GCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAATGACCGTGAAACAGGCGCCGCGGTGCCCGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGAAC‑GCCCGCTCCCCCAGGCTGATTGC > LH00941:114:22FVMWLT1:2:1265:40559:8478/1‑151 (MQ=60)
ATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGCCCACGAAACAGGAGCCGCGGTGCATGGCACCGGCTTTGCCAGTGTTcgcgggcacaaccgctcccacaggactattgaaat > LH00941:114:22FVMWLT1:2:2261:29133:25259/1‑116 (MQ=60)
ATTAAGAGCCGGAACGAAGCTTTGGCACCACAGCAGGACGGAGGTTACAAAACGGGGGGAGCGGGGGTGCTCGCGAAACAGGCGCTGCGTTGCGGGGCACCGGTTTGGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCAT < LH00941:114:22FVMWLT1:2:1246:5743:14243/151‑1 (MQ=2)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGTGGGCGTGCCCAAGAAACAGGCGCCGCGGTGCAGGGCACCGGCTTTGCCGGTGgtcgcgggcatgcccgctcccccagaatgattgacatt > LH00941:114:22FVMWLT1:2:2237:18186:28046/1‑113 (MQ=60)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACCGGCGCCACGGTTCATGGCACCAGCTTTGCCGGTGTTctcaggtacacccccttccacagactgattggcatt > LH00941:114:22FVMWLT1:2:2158:44498:29551/1‑115 (MQ=60)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAAGAGCCGCGGTGTATGGCACCGGCTTTTCCGGTGTTC‑G‑CGGGCAC‑GCCCACTCCCACAAACTGATTGCCACT > LH00941:114:22FVMWLT1:2:2155:42307:9967/1‑151 (MQ=59)
TTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCGCGAAACAAGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCCCAGAATGATTGCCATT > LH00941:114:22FVMWLT1:2:2248:25740:17653/1‑151 (MQ=60)
TGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCAAAACAAGAGCCACGGTGCATGGCACCAGGTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCTCTCCCCCAGAATGATTGCCATTAAGAGGGCCTCTCGCTAaagg > LH00941:114:22FVMWLT1:2:1250:17530:2537/1‑147 (MQ=44)
TGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCGCGAAACAAGCACCACGGTGCATGGCACCGGCGTTTCCGGTTTT‑‑TGCGGGCAC‑GCCCGCTCCCACAGACCGATTGCCATTAAaacgggccaacgctgcaat > LH00941:114:22FVMWLT1:2:1128:38673:16901/1‑132 (MQ=60)
GGACTGAGGCTGCCAAACGGTGGGAGCGGGGGGGGCCGCGAAACAAGCGCCGCAGTGTATGGCCccagcttttcctgtgttctccggcacgccccctccccccgaactatctcttctccacacctcctcaccccccagaagatcgcacaca > LH00941:114:22FVMWLT1:2:2101:24482:3658/1‑64 (MQ=32)
GACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGCCCACAAAACAAGCGCCGCGGTGTACGGCACCGGCTTTGCCGGTGTT‑‑Ttcgggaacgcccagtcccacagaacgagtgccattgaaggggactatcactacaaggacagaacattttt > LH00941:114:22FVMWLT1:2:2126:43582:12753/1‑81 (MQ=31)
GACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACCAGCGCCGCGGTGCATGGCACCAGCTTTGCCTGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCCCAGACTGATTGCCATTCAGCGGGGCTCCCGCTACAGTGAAGGCCCGTTTTT > LH00941:114:22FVMWLT1:2:2269:24113:8878/1‑151 (MQ=26)
tgtttcGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAA > LH00941:114:22FVMWLT1:2:2267:16994:2025/7‑151 (MQ=60)
tgtttcGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCACGTTTTTTGTTGCCTCGCTAACGAA > LH00941:114:22FVMWLT1:2:2267:16985:2009/7‑151 (MQ=60)
GTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG < LH00941:114:22FVMWLT1:2:2159:45367:2297/60‑1 (MQ=5)
TGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG < LH00941:114:22FVMWLT1:2:2159:45348:2297/59‑1 (MQ=11)
GGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTC > LH00941:114:22FVMWLT1:2:1149:23817:17173/1‑151 (MQ=60)
CGTGAAACAGGCGCCGTGGGGCGTGGCACCGGCTTTGCTGGTGTT‑‑TGCGGGCACTC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:2235:2488:26669/151‑1 (MQ=60)
CGCGAAACAGGCGCCGTGGTGCGTGGCACCGTTTTTGCCGGTGTTCGT‑‑GGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAA < LH00941:114:22FVMWLT1:2:2222:5789:9807/151‑1 (MQ=60)
GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAG > LH00941:114:22FVMWLT1:2:2113:21284:24763/1‑151 (MQ=60)
gagacaGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGC < LH00941:114:22FVMWLT1:2:1152:15921:5355/145‑1 (MQ=60)
CCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAG > LH00941:114:22FVMWLT1:2:2123:49296:14931/1‑151 (MQ=60)
CCGCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAG > LH00941:114:22FVMWLT1:2:1266:23807:26412/1‑151 (MQ=60)
GCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAT > LH00941:114:22FVMWLT1:2:2206:32572:26348/1‑151 (MQ=60)
GCGGTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAT > LH00941:114:22FVMWLT1:2:1255:18797:2617/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACtgtctcttatacacatc > LH00941:114:22FVMWLT1:2:2208:4079:29327/1‑134 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2222:6029:22873/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2226:20304:15059/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2261:5133:20840/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2211:18593:24523/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1125:31481:18502/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1103:10032:26637/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2207:18556:9247/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2170:35595:6989/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2168:24529:12417/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1222:11650:13266/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1270:40670:21737/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1246:18334:8958/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2157:1786:18694/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1270:40661:21753/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2150:47475:5371/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1257:5539:9567/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2133:11271:13442/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:1270:40661:21721/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTG > LH00941:114:22FVMWLT1:2:2133:11280:13426/1‑151 (MQ=60)
GTGCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCAACAGACTGATTGCCATTACGCGGGCCTATCGATACAGTGACGACCCGTTTTTTGTTGCCTCGCTAACGAATCATGAATCCCTTAGAACGCTATCAAGCATATCTG > LH00941:114:22FVMWLT1:2:1138:36288:2361/1‑151 (MQ=60)
GCNTGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1107:42723:1112/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2116:49472:14435/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1215:25601:16997/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1126:50581:21897/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2259:28606:2409/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2259:28596:2393/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1205:46707:1833/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2151:6039:14819/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:1230:24676:6460/1‑151 (MQ=60)
GCATGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAA > LH00941:114:22FVMWLT1:2:2116:29317:27853/1‑151 (MQ=60)
TGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG > LH00941:114:22FVMWLT1:2:1211:49841:27437/1‑151 (MQ=60)
TGGCACCGGCTTTGCCGGTGTTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG > LH00941:114:22FVMWLT1:2:2120:22615:24699/1‑151 (MQ=60)
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TTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑‑T‑CGGGCAC‑G‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG > AE015451_phaM1/1499335‑1499624
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
