Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F84 I7 R1 15 469.0 14922404 96.8% 14444887 150.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,674,769 Δ12 bp coding (857‑868/1035 nt) tqsA → pheromone AI‑2 transporter

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1674769 1674780 12 414 [0] [0] 417 tqsA pheromone AI‑2 transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16747680 (0.000)390 (0.870) 200/288 0.2 100% coding (856/1035 nt) tqsA pheromone AI‑2 transporter
?NC_000913 1674781 = 0 (0.000)coding (869/1035 nt) tqsA pheromone AI‑2 transporter

GATK/CNVnator alignment

N/A