Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
113 |
83.2 |
1840812 |
91.6% |
1686183 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,749,428 |
T→G |
18.8% |
G66G (GGT→GGG) |
sgbU → |
putative L‑xylulose 5‑phosphate 3‑epimerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,749,428 | 0 | T | G | 18.8%
| 145.1
/ 5.4
| 77 | G66G (GGT→GGG) | sgbU | putative L‑xylulose 5‑phosphate 3‑epimerase |
| Reads supporting (aligned to +/- strand): ref base T (22/37); new base G (16/2); total (38/39) |
| Fisher's exact test for biased strand distribution p-value = 1.20e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCA > NC_000913/3749202‑3749665
|
gcAAATCGGCGCTATCGGGGGAGGTTCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATccc < 1:363379/238‑1 (MQ=255)
gggggAGGTGCGCGTGCGTAATTATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGGTCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCg < 1:378543/238‑1 (MQ=255)
gTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGTCGATGTGCCTGTCCGCCCAtc > 1:186938/1‑238 (MQ=255)
tGCGCGTTGGTAATCATCAGTTAGGGATTTATGAAAACGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTTGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACAtcg < 1:853507/238‑1 (MQ=255)
tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCCCGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGCCGATGTGCCTGTCCCcacgccaa > 1:137815/1‑234 (MQ=255)
tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCCCAAAGGACTTCGCTGGTTGCCCCGGTGATCGAACCAGGTGTTGGGATCCCGTCGATGGGCCTGTCCGCACAtcg > 1:57153/1‑238 (MQ=255)
tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGGTCGAAACAGGGGTTGGGATCCCGCCGAGGTGCCGTTCCGCCCAtcg > 1:355308/1‑238 (MQ=255)
tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTggg > 1:89914/1‑209 (MQ=255)
tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGCGGCTGTGCCCGTcccccaaccg > 1:253914/1‑230 (MQ=255)
tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGAGCCCGGCGATGGGCCTGTCCGCACAtcg > 1:299401/1‑238 (MQ=255)
tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCCCTCACGTCTTGACTGGGAGGCCGCACAAAGGCCTTCGCTGGTGGCCGCGAGGATCGAAAACGGGGTTGGGATCCCGGCGGTGGGCCttgcccgccaacg > 2:569770/1‑226 (MQ=255)
tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACAGCTCTCCAGCCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGGTGCCCCGGAGTGCGAACAAGGGGTTGGGGTCCCGGCGATGTGGCCTTCCGccaaccgt > 2:568834/1‑232 (MQ=255)
tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAAACGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGGCGGTGTGCCTGTCCGCACAtcg > 1:901125/1‑238 (MQ=255)
cgcgTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGGTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAAGGCCGCACACAGGACTTCCCCGGGTGCCCCGGTAGTGGGAACAGGGGGTGGGCACCCGGACATGTGccggcccccccaaggggg > 2:486348/1‑223 (MQ=255)
cgtgcgtAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGGTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCACTCACGTCTTGACTGGAGGGCGGCCCAAAGGACTTCGCTGGTTGCCGCGGTTATCCGAACCGTGGTTGGGATCCCCTCGCTTGGCCTTCCCGCACCtcacccct > 2:489097/1‑233 (MQ=255)
tAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGGGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCCCAAAGGACTTCGCTGGTTGCCGCGATGTTCGAAACAGGGGTTGGGAGCCCGTCGATGTGCCTGTCCACAAAtgggccggttc > 2:122901/1‑226 (MQ=255)
cgTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGAGGTTTTGATTTTGTCGAACTGTCGGTGGTTGCAACCGACGACCGGGTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCCGGCTGCCGCGAGGATCTCAACATGTGTTGGGCACCCGTCGCTTGGCCTGTACCCACATCACCGCTTTACCCTTGGTAGc > 2:170524/2‑239 (MQ=255)
aGTTAGGGATTTATGAAAAAGCGGTTGGGAAAGGTCCCCTCTGGGCGGAGCGGCTGGGGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGc < 2:587987/239‑1 (MQ=255)
aGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCAACAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGAACCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCggg > 1:193882/1‑237 (MQ=255)
ggATTTATGAAAAAGCGGTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTGGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGAc < 1:528377/239‑1 (MQ=255)
gATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCCCTCACGGCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAAAAGGGGGTGGGCTCCCCTCCAGTTGCCTGTCCGCACACCCTCCCTTTCCCTTTGGGAGCCGGGACg > 2:181423/1‑239 (MQ=255)
ttttGTGAAAAAGGCTTGGGGGAAGTTCTCTCCTGGGGGGGGCGGGGGGGGGGGGCAAAAAGCTGCGGTTTGGGTTTTGTCGGAATGGCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGCCTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACg < 2:253914/237‑1 (MQ=255)
ttATGAAAAAGCGCTGGCGAAAGATCTCCCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAgg < 1:569770/239‑1 (MQ=255)
aTGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACCTCGTCGCTTTCCCTTTGGTAGCCGGGACGAGGcc > 1:726924/1‑238 (MQ=255)
aTGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGGTCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCa > 1:87756/1‑239 (MQ=255)
aTGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGCCGAgccc > 1:378632/1‑236 (MQ=255)
aTGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCCCTCACGTCTTGACTGGAGCGCCGCACAAAGACCTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGTCGTGGGGCCCTTCCCCCCACCGCCCCTTTCCCTTTGGGAGCGGGGACggggag > 2:883132/1‑237 (MQ=255)
tgttGGGGAAAGTTCCCTCGTGGCCGGGGGGGTTGGTGCTGGCAAAAAGGTGGGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTGTCACGTTTTGACGGGAGCGCCGCACAAAGGCATTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGaa < 2:57153/236‑1 (MQ=255)
gAAAGGTCTCTCCTGGCCGGAGCGGGTGGTGCTGGCAAAAAGCTGGGGGTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGgcg < 1:849447/238‑1 (MQ=255)
aGATCTCTCCTGGCCGGGGCGGCTGTGGCTTGCAAAAAGCTGCGGTTTTGATTGTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCggg < 1:83520/239‑1 (MQ=255)
gacccctcCTGGGCGGGGGGGCTGGTGGTGGCAAAAAGCGGGGGTTTTGATTTTGGTGAAATGGCGGTGGATGAAACCGACGAACGGCTCCCACGTCTTGACGGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCggg < 2:402175/233‑1 (MQ=255)
tctcCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGGGGCAGGGGGCGAACGGGCACGGGAAATc > 1:308895/1‑239 (MQ=255)
tctcCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATc < 1:719801/239‑1 (MQ=255)
ggCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGGAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGGAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATAGTCGCTTTTCCTTTGGTAGCCGTGACGAGGCAGTGGGCGAACGGGGGCGGGGAATCaggggg > 2:352713/1‑234 (MQ=255)
gCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGGCGCGATGATCGGAACCGGTGTTGGGCACCCGGCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGTCGAGGCCGTGCGCGAACGGGCGCGGGaacacaagagga > 2:168921/1‑229 (MQ=255)
gCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCCCGGGAAATCATGGGTa > 1:718103/1‑239 (MQ=255)
gggggCGGTTGGTGCTGGCAAAAAGGTGCGGTTTTGATTTTGTCGAAATGGCGGTGGATGAAACCGGCGGACGGCTCGCACGTCTTGACTGGAGAGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTaa < 2:299401/234‑1 (MQ=255)
aGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCCCGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGa > 2:859919/1‑144 (MQ=255)
aGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGa < 1:859919/144‑1 (MQ=255)
aGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGGGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGtctgtct > 1:402175/1‑233 (MQ=255)
aGCGGCTGGTGCTCGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGGTGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCCAGGATCGGAAAGGGTGTTGGGATCCCGTCGATGTGGCTGTCCGCACACCGGCGCTTTCCCTTTGGTAGCCGTGACCGTGCCGTGCGGGAACGGGGGCGGGGAATGATGAGTAAACCg > 2:229029/1‑239 (MQ=255)
cGGCTGGGGCGGGCAAAATGGTGCGGTTTTGATTGTGGCGAAATGGCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTGCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGa < 1:170524/238‑1 (MQ=255)
ggggCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGGCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGc < 1:28306/235‑1 (MQ=255)
gCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGGGAACGGGCGCGGGAAATCATGGGAAAAACGAATCGCCggggggg > 2:774553/1‑235 (MQ=255)
gaaaaaggcccGGTTTTGATTTTTGCGAAAGTGCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGCGCGCCGCTCAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGgcgcg < 1:910185/228‑1 (MQ=255)
cAAAAAGCGGTGGTTTTGATTTTTACGAAATGGCGGTGGAGGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGGCTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGgcgcg < 2:486292/238‑1 (MQ=255)
aaaaaaGGTGCGGTTTGGGTTTTGGCGAAATGGCGGGGGATGGAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGgcgcg < 1:489097/237‑1 (MQ=255)
tgggCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGTCGAACGGCTCTCACGTCTTGACTGGGGCGCCGCCCAAAGGCCTTCGCTGGTTGCCGCGATGATCGAAACAGGTTTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGAtctc < 2:726924/236‑1 (MQ=255)
gCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGcc < 1:15778/135‑1 (MQ=255)
gCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGcc > 2:15778/1‑135 (MQ=255)
gCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGCCGGGGCAGTGGCCGACCGGGCCGGGGAAACCATGAGAAAACGGATTCGCCTGGCGCGCGATCACGGc > 2:227190/1‑239 (MQ=255)
gCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGGGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCgg > 1:486292/1‑238 (MQ=255)
tttttttttGGCGAAATGGCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGGGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGGTCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCg < 2:87756/234‑1 (MQ=255)
gTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGTGGCAGTGCGCGACCGGGCCCGGGCAATCATGAGTAAAGGGATTCGCCTGGGGGGCGATCTCGGCATTCGCaccaacca > 2:670555/1‑239 (MQ=255)
ttGTCGGGGGTTGAAACCGACGAACGGGTCTCACGGTTTGACTGGAGGGCCGCAAAAAGGACTTCGCTGGTTTCCGCGATGATCGAAACAGGGGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGc < 2:327434/238‑1 (MQ=255)
attggggTGGATGAAACCGTCGACAGGCCCTCACGTGTGTGCGGGAGGGCCGCCCAAAGGACTTCGCTGGTGGCCGCGATGATCGAAAGAGGTGTTGGGATCGCGTCGATGTGCCTGCCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGc < 2:736482/234‑1 (MQ=255)
gTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTGGACTGGAGCGCCGCACAAAGGCCTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAg < 1:227190/239‑1 (MQ=255)
gATGAAACCGACGAACGGCTCTCACGGCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATg < 1:774553/238‑1 (MQ=255)
tGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGAc < 1:670555/238‑1 (MQ=255)
ccGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGGGCGGGAAATCATGAGGAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGAAGGTTATGACGTCTAt > 1:386847/1‑239 (MQ=255)
acgaACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCAACCTGGCAGGGTAGGACGTCTATTAc > 1:685153/1‑239 (MQ=255)
ggttttccggTCTTGTCTGGAGGGCCGCGCAAAGGTCTTCGCGGGGTGCCCCGATGATCGAAACAGGTTTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGGGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑c < 2:308895/230‑1 (MQ=255)
ggCTCTCGCGTCTTGACTGGGGCGGCGCCCAAAGGACTTCGCTGGTTTCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGGGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑c < 2:186938/239‑1 (MQ=255)
ttGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGc > 1:158531/1‑239 (MQ=255)
gagtgccggcaaaaGGGCTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGGTCCTGGCCGCACATCGGCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCgg < 1:34805/227‑1 (MQ=255)
gcgcCGGAAAAAGGGCTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGGCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCa < 1:181423/238‑1 (MQ=255)
cgccaaagggtctttgttGGTTGCCGGGATGATCGAAACAGGGGTGGGGATCCCGTCGAGTGGCCTGGCCGCACATCGTCGCTTTCCCTTTGGTAGCCGGGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGtt < 2:378632/222‑1 (MQ=255)
cgcACAAGGGGCTTCGCTGGTTGCCGCGATGAACGAAATCGGTGTTGGGATCCCGTCGATGGGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGtt < 1:131940/239‑1 (MQ=255)
cgcACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGGAGA‑CCACGACGAAGGCACCCGGCAACGtt > 1:368654/1‑239 (MQ=255)
cgcACAAAGGACGTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGGCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGtt < 1:112615/239‑1 (MQ=255)
aGGACTTCGCTGGTTGCCGCGATGATCGAAACGGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGa < 1:645939/239‑1 (MQ=255)
cTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAgg < 1:650394/238‑1 (MQ=255)
cgctgtattccGCGATGATCGAAGCAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAATTCATGAGTAAAGCGATTCGCCTGGCGCGCATTCTCGGCATTAGCACCATCCAGCTGTCAGGTTATTGCTCCTATTACGAAAACCCACG‑CGAAGGAACCCGGGAAACTTTTGCTCAAAGGGTg > 2:523068/10‑239 (MQ=255)
gTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTg > 1:258142/1‑239 (MQ=255)
tGCCGGGATGAGAGAAACAGGTGTTGGGATCCCGTCGCTGGGCCTGTCCGCACATCGTGGCTTGCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTggg < 1:900835/239‑1 (MQ=255)
tgatCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGGCCGCACAGCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGa < 1:673991/238‑1 (MQ=255)
gAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAggc < 1:255370/239‑1 (MQ=255)
gttgtTGGGTTCCCGGTGTTGGGCCTGTCCCGACATCGGCGCTTTCCCTTTGGGAGCCGTGACGGGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAggcggcggc < 2:158531/237‑1 (MQ=255)
gtgtTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCCAGGGCATGCGAAAAggaggcggaa > 2:187515/1‑237 (MQ=255)
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GCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCA > NC_000913/3749202‑3749665
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
