Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F18 I0 R1
|
274 |
115.5 |
2655328 |
86.7% |
2302169 |
226.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,383,718 |
C→A |
19.6% |
E82* (GAA→TAA) |
ycjW ← |
LacI family putative transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,383,718 | 0 | C | A | 19.6%
| 133.1
/ 5.3
| 73 | E82* (GAA→TAA) | ycjW | LacI family putative transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (49/7); new base A (2/13); total (52/21) |
| Fisher's exact test for biased strand distribution p-value = 1.10e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAA > NC_000913/1383488‑1383948
|
ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGTCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCTGGATTGTGCGCCGTTTGTAATATCACGTCACAACTTTCTTCTTCCGCTTTGGCGGTGTTTGCATCCACAACTTccatgaaaa > 1:1071400/1‑231 (MQ=255)
ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGCCGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGAAAAAATTCaaaaaaaa > 1:199012/1‑239 (MQ=255)
ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTACTATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCATGTAAAACTTACGAGaaaa > 2:1007184/1‑239 (MQ=255)
ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGaaaa > 2:676171/1‑239 (MQ=255)
ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATAACGTCGAAACCTTCTTCTTCACCTTTGGCGGGGATGGCATGCAAAACTTTAGAGaaaa > 1:851970/1‑239 (MQ=255)
tatTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGTGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAAATTCTAGGAAAAC‑Cgg > 2:405727/1‑239 (MQ=255)
cTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTCCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGAGTCTATGCAAAACTTCAACAACAAA‑CGGATAAcc > 1:902141/1‑238 (MQ=255)
gCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGttt > 2:189979/1‑239 (MQ=255)
ccaccGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACgg > 2:1219566/1‑239 (MQ=255)
ccGGAATATCATATTTATCGGGTTGGGAAAAAAATGA‑TCACTCCGTGGGGCAACTGAGCAAAATAATGCCTTTAATCATTTTCTGCTTATTTTTGTTTTCGCTTTTTTGCAGTTCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTa < 2:1057574/239‑1 (MQ=255)
tCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCa > 2:1108545/1‑238 (MQ=255)
tatTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCTTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTCCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCATGCTAAACTTCAGAGAAAAA‑CGGGTTAACCACC‑GTAGTTTTggggtaaaggggtgaaaacaacaa > 1:928876/1‑217 (MQ=255)
ttATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATAACCATAAt > 2:552028/1‑239 (MQ=255)
aTCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGATCATAATAATGCCTTTAATCATTTTCTGCTTAATTGTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTTCGACGTTTGTAATATCCCGTCGTAACCTTCTTCTTCAGCGTTGGAGGGGGTGGCATTCAAAACTTAAGGGCAAAA‑CAGATAACCCGCC‑GTAGTGTTGGCGGAACAAGAAGAAAtacccaaaaggg > 1:1065707/1‑228 (MQ=255)
aTCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGGATGCAAACCTTCAGGGAAAAA‑CGGATTCCCCCCC‑TGAATTTTGGTCGAACGGGtgaaaaaacacaaaaagg > 1:738582/1‑222 (MQ=255)
cGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCa > 2:167846/1‑239 (MQ=255)
cGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTACTTTTGTCCGAACGGGAAAAAAAAACCAAAAT‑GGCa > 1:93901/1‑239 (MQ=255)
cGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCATCTTCAGCTTTGTCGGTGAGGGCGTGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCG‑GGAGTTTTGTTCGAACGGGTAGAAAtaaaaaaaaaggaa > 1:294173/1‑226 (MQ=255)
gAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGCTTGTGCGACGTTTGTACTATCACGTCGAAACCTTCTTCTTCCGCTTTGGCGGCGATGCTATGGAAAACTTCCGAGACAAA‑CGGATTACCCACCGGTGTTTTTGGTC‑AACGGGGAGAAATCACCaaaaagagct > 1:261425/1‑233 (MQ=255)
ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTTCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCAAGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCCCC‑GTAGTTTTGGGCGAAAGGGTAGaaaaccacaacaaagcaatca > 1:843781/1‑221 (MQ=255)
ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGTTTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGAtt < 2:342781/189‑1 (MQ=255)
ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCCAAACTTCAAAGAAAAA‑TGGATTACCCCCC‑GTTGTTTTGGGCCAAACGGTAGAAAACACCACaaaaccaaaca > 1:544640/1‑230 (MQ=255)
ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGGGAAAAA‑CGGATTTCCCGCC‑GTAGTTTTGGTCGAAAGGGTAGAAAAAACCAAAAT‑ggaaaaaa > 1:128759/1‑233 (MQ=255)
ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGAtt > 1:342781/1‑189 (MQ=255)
ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTAGAAACCTTCTTATTCGGCTTTGGCGGGGCTGGCTGACAAAACTTCATAGAAAAA‑CGGATTACCCACC‑GCAGTTTTGGTCGAACGGTGAGaaaaaaacaaaaaggcaaaaa > 1:1314287/1‑221 (MQ=255)
gggCAAAAAAGGCCTCA‑TCGGCGGGCAAACTGAAAATAATAATGCCTTAAATCTTTTTCTTTTTAATTTTGTTTTCGCTTTTTTGCAGTTCTTCTGCCGGATTGTGGGACGTTTGAAATACCACGGCGAAACTTTCTTCTCCAGTTTTGGGGGTGATGGCAGGAAAAACTCAAGAAAAAAA‑CGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCaaa < 2:851970/238‑1 (MQ=255)
gACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAAAggc > 2:1035964/1‑238 (MQ=255)
aaCTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTTCCCGCC‑TTAGTTTTGGTCGACAGGGTAGAAATCACCAAAAT‑GGCACAAAAAACCGAAAAGGGTAGGGC‑GC‑GGGCCAga > 1:1003052/1‑238 (MQ=255)
aaCTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCa > 2:115869/1‑237 (MQ=255)
gAGTATAATAATGCCTTTAATTATTTTCTTTTTAATTTTGTTTTCCCTTTTTTGCAGATCTTCTGCCGGATTGGGCGACGTTTGAAATATCACGTCAAACCTTTCTTCTCCGGTTTTGGGGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGt < 2:635890/239‑1 (MQ=255)
taatGCTTTTAATCTTTTTCTGTTTATTTTTGCTTTCCTATTTTTGCAGATCTTCTGCGGGATTGTGCGACGTTTGAAATATCAGTGCGAACCTTTCTTCTTCAGTTTTGGGGGTGAGGGCTGGCAAAACTTCAAAAAAAAA‑CGGTTTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGa < 2:199012/239‑1 (MQ=255)
taatCCCTTTAATCATTTTCTTTTTATTTTTGCTTTCGCTTTTTTGCAGTTCTTCTGCCGGATTGTGCGACTTTTTAAATTCCACGTCGAACCCTTCTTCTTCAGTTTTGGCGGTGATGGCATGAAAAACTTCAGAAAAAAC‑CGTATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGa < 2:128759/239‑1 (MQ=255)
tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCCCGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCCAAGACAAA‑CGGATTTCCCGAC‑GTGGTTTTGGTCGAACCGGCAGAAATACCCCTAAT‑GGCACAAAAACCCGAAG‑GGTGAGCGCAGC‑GGGTCAGCtgttatggatgaaca > 1:1183959/1‑225 (MQ=255)
tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGGTGGCATTCAAAACTTCAGGGAAAAA‑CGGATTACCAGCC‑GTAGTTTTGGCTGCACCGGTAGAAAACATCCACAT‑GGCATTCAAACCCGAAGGGGTACACGC‑GG‑GGGCCacacttttgtgtgaaaac > 1:50231/1‑222 (MQ=255)
tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGAt > 2:1005064/1‑237 (MQ=255)
ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTATTATAACTTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCATGCTAAACTTCAGCAGAAAT‑CGAATTACCCGCC‑GTAGCTTTGTTCGACTTGTTAGTAATCACCCTAAT‑AGCATCACAATCCGAAGAGGTCATCAC‑GC‑GAGCCACCCTGCTTGGCTggatcgt > 2:91143/1‑233 (MQ=255)
ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTCGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGAt > 2:150392/1‑235 (MQ=255)
ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGCAGAGGGCAGCCC‑GC‑GGGCCCGCTTGTTTGGCTGAAACTg > 2:149865/1‑239 (MQ=255)
ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATAACCATAAT‑TGCATCAAAACCCGAAGAGGTCA‑CCC‑GCGGGGCCAGCTTGTTTGGGTGGTaaag > 1:1291302/1‑236 (MQ=255)
ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GGAGTTTTGGTCGAAGGGGGAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGA‑CC‑GGGCCAGCCTGTTTGGccgcaactg > 2:1286818/1‑231 (MQ=255)
ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTaa > 2:489449/1‑239 (MQ=255)
ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTaa > 2:1261537/1‑239 (MQ=255)
ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCAGAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑CC‑GGGCAAGCTTGTTTGGCTGATACTGTaa > 2:765702/1‑239 (MQ=255)
ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGGTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGCCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTaa > 2:1064123/1‑239 (MQ=255)
taaattgttttCTGTTTAATTTTTGTTTCGTATTTGTTCAGTTCTTCGGCGGGTTTGTGGGACTTTTGAAATATCCCGTCAAAACCTTCTTCTCCAGTTTTGGGGGTGATGGCATGCAAAACTCAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTaa < 2:693657/232‑1 (MQ=255)
aaTCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCTTCAAAACCCGAAAAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGGAAtt > 2:1070691/1‑239 (MQ=255)
cTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGCAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAAAACttt > 2:1174247/1‑239 (MQ=255)
tCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTTATTGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGATCGGGTAGAAATCACCATAAT‑GGCATCAAAAACCGAAGAGGTCAGCGC‑GC‑GGGCCAGCCTGTTTTGCTGATACTGTAATTCTTCAATGGGCCGGAAACCTTTTTc > 1:811084/1‑239 (MQ=255)
cGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGTCTGATACTGTAATTCTTAAATGGCCCGGAAAACTTTTTc > 1:928133/1‑238 (MQ=255)
ttgttGCAGATCTTGTGGCGGTGTGTGGCACGTTTGAAAATTCCCGTCAAACCCTTCTTCTGCAGTTTTGGCGTGGAGGGAATGCAAAACTTAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTcgcgcg < 2:843781/236‑1 (MQ=255)
aGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGt > 2:328534/1‑164 (MQ=255)
aTCTTCTGCCGGATTGTGCGCCGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATTCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCCAAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGGAACTGTAATTCTTCAAAGGCCCGCAAACCTTTTTTCGGGGCTTCCcggg > 1:849119/1‑239 (MQ=255)
gattggggcggcgTTTGAAAACTCACGCAGAACCCTTTTTCTGCGGTTTGGGGGGTGATGGCATGAAAAATTTAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAg < 2:544640/231‑1 (MQ=255)
tggggCGACTTTTGGAATACCACGTCGAAACCTTCTTCTTCAGCTTGGGCGGTGAGGGCATGAAAAACTTAAGAAAAAAA‑CGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTg < 2:93901/235‑1 (MQ=255)
tgCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGGTACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCtt > 2:651046/1‑239 (MQ=255)
ttttTAATATCCCGCCAACACCTTTTTCTCCATTTTGGGCGTTGATGGAATGCAAACTTTAAAAAAAAAA‑CGAATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAg < 2:738582/238‑1 (MQ=255)
aaaaTACCACGGAGAAACCTTCTTTGTCAGGTTGGGCGGTGAGGGCATGAAAATCTTAAAAAAAAAG‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑Acg < 2:1095974/237‑1 (MQ=255)
cACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATa > 2:491543/1‑239 (MQ=255)
cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGAATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATAACCATAAT‑GGCCTCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCAAGCTTGTTTGGCTTATCCTGTAATTCTTCAATGGCCCGGAACCCTTTTTCGCGCGCTTTCGGGGGGAAATTAGATTGGTTTTTCAGA‑Acgctgtaacgg > 1:744682/1‑231 (MQ=255)
aaaCCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAAAACCTTTTCGCGCGCTTCCGGGGAGCTATTAGTTTGCTTATTCAGC‑ACCCGGGTTACgtcg > 2:139133/1‑234 (MQ=255)
tcttcttcAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGGGC‑GC‑GGGCCAGCTTGGTTGGCTGATACTGTAATTCTTCAATGGCCCGGAACACTTTTTCGCGCGCTTTCGGGGTGATATTAGTTTGCTTATTCAGA‑Ccgcggggatatgggggttttgt > 1:339293/1‑221 (MQ=255)
tcttcttcAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCCGGATACGGTGGAttttta > 2:196407/1‑237 (MQ=255)
tttgttcAGCGTGGGGGGTGATGCAATACAAATCTTAAGAGAAAAC‑CGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGAt < 2:744682/235‑1 (MQ=255)
tttcttcCGTTTGGGGGGTGAGGGGATGAAAAACTTCGAAAAAAAC‑CGGTTCCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGAt < 2:647738/238‑1 (MQ=255)
aGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACg > 2:901573/1‑236 (MQ=255)
gCTTTAGCGGTGATGGCATGCAAAACTTCAGAGAAAAC‑TCGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGAATCAAAAACCGAAGGAGTCAGGGC‑GC‑GGGCCATCTTGTTTGGCTGATACTGTAATTATTCAATTGCCTGATCCACATTTTCTGGGGCTTCCGGGGGGGTCTTGATTTGCTTTTTAGCCAATGCG‑GTTACGAGGGATTTTGATAGGCCTGc > 1:278121/1‑239 (MQ=255)
ggtgtcctgaaaaacCTTAAGAAAAAAA‑CTTATTCCCCGCC‑GTAGTGTTGGGCGAACGGGTAAAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 1:651046/228‑1 (MQ=255)
gATCGCATGCAAACCTTCAGAGAAAAC‑AGAATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATGCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 2:261425/238‑1 (MQ=255)
tgtgggttgaaaaATTGAGAAAAAAATGGGTTTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 1:552028/229‑1 (MQ=255)
gggCATACAAAGCTCAAGAGAAAAC‑CGGTGTTCCCGCC‑GGAGTTTGGGTCGAACGGGTAGAAACCCCCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAata < 2:602586/238‑1 (MQ=255)
ggaaTGAAAACCTTAAGAAAAAAC‑GGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAata < 2:339293/235‑1 (MQ=255)
ggaaTGAAAAACTTAAGAAAAAAA‑CGAATCCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAata < 2:1291302/235‑1 (MQ=255)
tgataacgttCAAAGAAAAA‑CGGTTTCTCCGCC‑GTACTTTTGGTACAACGGTGAGAAATCACGAAAAT‑GGCTTCAAAACCCGAAAAGGTCAGCGC‑GC‑GGGACTGGTTGTTTGGCTGATGCTGTAATTATTCAATTGCCCGTAACACTTTTTCGTGAACTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGGCTGCAACCCTGGAAATAGCAt < 1:58352/230‑1 (MQ=255)
cAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCTCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCCGC‑ACGCGCGATCCGGGGGCTTTTGATACGCCTGCAACCCTGGCAaaatagaaaa > 1:1007842/1‑233 (MQ=255)
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GGCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGC‑GC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAA > NC_000913/1383488‑1383948
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
