Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F18 I0 R1
|
274 |
115.5 |
2655328 |
86.7% |
2302169 |
226.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,473,746 |
T→G |
21.5% |
pseudogene (3230/3497 nt) |
ydbA → |
pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,473,746 | 0 | T | G | 21.5%
| 106.3
/ 3.2
| 51 | pseudogene (3230/3497 nt) | ydbA | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base T (17/20); new base G (5/8); total (22/29) |
| Fisher's exact test for biased strand distribution p-value = 7.51e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCAGCGATA > NC_000913/1473520‑1473978
|
cTGGTACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTg < 2:442481/238‑1 (MQ=255)
cGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGGGGACAGCATCGTCGGGCTGAAACTTGACTACGCAGGGCAAGACGGCCGGagggcc‑agc > 2:736724/1‑238 (MQ=255)
cGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGAC‑TTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGGAACTGGCCTCACCCGGTACAGACGGCTGGagcgct‑agc > 2:473572/1‑237 (MQ=255)
cGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGGCTACGCAGGGAAAGACGGCTGGAGGGCT‑AGCGCTACCCTGGAAGGCGGGCCGaa > 2:206996/1‑236 (MQ=255)
cGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGGCGGGCTGAAACTGGACTACGCAGGGAAAAGAGGCCGGGGCGCC‑AGCGCTAGCCCGGAAGGCGGGCCCAAccc > 2:978076/1‑238 (MQ=255)
aaGGGGCGAAGACTTTCCAACCGAGCGAAGGACTGAAGGTTACGCCATATGGGGGTGTAAAACTGCGTCACTCACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTa < 2:1179251/238‑1 (MQ=255)
ttggAACCGGGGGAAGGACTGAAGGTTACGCCAGTGGCGGGTGTTAAACTGCGTCACACACTTGAAGGTGGCTATCAGGAGCGCAATGGCGGAGACTTGAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCg < 1:528563/236‑1 (MQ=255)
cccGGGCGAAGGACTGAAGGTTACGCCATATGCGGGGTTAAAACCGCGTCAACCACTGGAAGGTGGCTAGCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACgg < 1:206996/238‑1 (MQ=255)
aGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTgg < 2:1095165/239‑1 (MQ=255)
aCTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGgca < 2:1116418/238‑1 (MQ=255)
tGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGgcaggc > 2:1128103/1‑239 (MQ=255)
ggTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGCACCTGAGCTACGCGACGAGCCAGCGGACGGCAAACCTGGCAGGGGCAGGCAGTCAGCCCTTTaa > 2:172163/1‑239 (MQ=255)
tAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGGAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCGACGCGAAGAGCCAACGTACGGCAAGCCGTGCAGGCGCAGGCAGGCAGCACTTTAACGTc > 2:1097622/1‑239 (MQ=255)
ggAAGTGGGCTATCAGGAGCCAAATGCCGGAGTCTTTAACCTGAATATGAACGGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGggcg < 2:586840/239‑1 (MQ=255)
ggTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCCGGTAAAGACGGCTGGGGCGCTAAGCG‑TACGCTGGAAGGCGGGCCCAACCCGAGCTCACCGAAGAGCCACCCGACGGCAAGCCAGGCAGGGGCAGGCGGCCAGCACATTAAAGTCCATggaggtaaaaaagggggggg > 1:287455/1‑220 (MQ=255)
gTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGGACGGCAAGCCTGGCAGGGGCAGGCAGTCAGCCCCTTAAAGTCGGTGACGGGCAGAAGggcggcggc > 2:1254202/1‑239 (MQ=255)
gCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCCGGCCTTTAACGTCGGTGACGGTCCGAAGGGCGGCGGCATc > 2:598289/1‑239 (MQ=255)
tgttgaaaagaggcgagCCGAAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGTACAGCATCGTCGGGCCGAAACTGGACTTCGCAGGGAAAGACGGCTGGAGCGCG‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCATTCAGCACTGTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCa < 2:797855/223‑1 (MQ=255)
cTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCCTcc > 2:1047462/1‑238 (MQ=255)
gAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGGAAGCATCGTCGGGCTGAAACTGGACTACGCCGGGAAAGAAGGCTGGAGCGCT‑AGCGCTACGCTGGGAGGCGGGCCGAAACTGAGCTAAGCGGAGAGCCAGCGGTCGGCAAGCCCGGCCGGGCCCGGCGGGCACCACTTTAACGTGGCGGACGGGCCGAggggggggggagccaaaaaaca > 1:1285445/1‑227 (MQ=255)
ggccgaatcTTTAACCTGAATTGGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGCCGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGt < 2:1303625/231‑1 (MQ=255)
aggttttAACCCGAAAGAGAACCGTGGCAGGGAAACGGCGGTGGACAGCCTCGGCGGGCTGAACCTGGACTACGCAGGTAAAGGAGGCTGGAGGGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGc < 1:1097622/234‑1 (MQ=255)
gaCTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCg < 2:287455/238‑1 (MQ=255)
agctttaacgtaaagtgtgaCAGTGGGGGGGAAAGGGGGGGGGAACGCATGGTCGGGCTGAAACTGGAATACGCAGGGAAAGGCGGCTGGAAGGCC‑AGCGCTACGCGGGAAGGCGGGCCGAACCTGAGCAACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTAAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCg < 1:863303/219‑1 (MQ=255)
aaTAAGAACAGGGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCg < 2:447382/226‑1 (MQ=255)
gTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGGAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGGTGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAACGGTCGGCGTGAAGTACAGCGGCAAAGAAAGt > 2:696030/1‑239 (MQ=255)
gTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGGGGCATCAAAAACCTGACAAGGGTCGGCGGGAAGGAAAGCAGCAAAGAAAGt > 2:435969/1‑239 (MQ=255)
tGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAAAAGCCTGACAAACGTCGGGGTGAAGGACCAGAGCAAAGAAAGt > 2:670789/1‑238 (MQ=255)
ggCGAAACCGGGGGGGGCAGCATGCTGGGGCTGAAACTGGACTCCGCAGGGAAAGACGTGTGGAGGCAT‑AGCGCTACGCTGGAAGGCGGGGCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCt < 1:1254202/238‑1 (MQ=255)
gggAAACGGGGGGGGACAGGAGCGTCGGGGGGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGGGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCt < 1:1128103/236‑1 (MQ=255)
gCGAAACGGCGGTGGACAGCAGCGGCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCt < 2:1264936/238‑1 (MQ=255)
gggggTGGACAGGAGTGGCGGGGTGAAATGTGACTACGGAGGGAAAGGCGGCTGGGGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTgg < 1:172163/236‑1 (MQ=255)
gggtggacctcggggggggtgtGAAACGGGACTCGGAAGGAAAAGACGGCTGGACGGCT‑AGCGCGAGGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGGGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTgg < 1:940123/216‑1 (MQ=255)
ggTGGACAGCATCTTGGGGCTGAAAGTGGACTACGCCGGGAAAGACGGCTGGGGCACT‑AGGGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGAt < 1:736724/238‑1 (MQ=255)
ggACAGCAGCGTCGGGCTGAAACTGGGCTGCGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCAATTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCg < 2:1225643/238‑1 (MQ=255)
ggACAGCAGCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCg < 2:1138933/238‑1 (MQ=255)
cgCATCGTTGGGGTGAAACGGGTCTGCGCAGGTAAAGGCGGCTGGAGTGCC‑AGCCACACGGTGGAAGGCGGGCCGAACCGGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACaa < 1:598289/238‑1 (MQ=255)
cATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACa > 2:452482/1‑236 (MQ=255)
aaagggacagAAACCGGACTACGCAGGTAAAGCCGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGa < 2:1118311/230‑1 (MQ=255)
ggggggTTGAAACTGGACTACGCAGGGAAAAGCGGCGGGAGCGCG‑AGCGCTCCGCGGGAAGGCGGGCCGAACCTGAGCGACGCGGAGAGCCAGCGTACGGCAAGCCTGGGAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGaa < 1:696030/236‑1 (MQ=255)
tcgGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCCCTGAATCTGGATGCGTACAACTGGaaa > 2:473072/1‑239 (MQ=255)
aaCTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGc < 2:1018242/239‑1 (MQ=255)
aaCGGGACCACGGAGGGAAAGGCGGCTGGAGCGCT‑AGCGGTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCg < 1:719048/218‑1 (MQ=255)
tGGACTTCGCAGGGAAAGACGGGTGGGGCGCT‑AGCGCTACGAGGGAAGGCGGGCCGAACCTGAGGTACGCGAAGAGCCAGGGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGGCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATc < 1:939863/239‑1 (MQ=255)
tGGACTCCGAAGGTAAGGCGGGCTGGGCGGCT‑GGCGCTGCGCTGGAAGGCGGGGCGAACCTGAGCCACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGGGCAGTCAGTCAGCACTTTAACGTCGATGGCGGTCAGAAGGGCGGCTGCATCAATAGCCTGACAAGCGGCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATc < 1:473572/239‑1 (MQ=255)
tGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATc < 2:1285445/239‑1 (MQ=255)
gACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGGACAGCAGCAACGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCa > 2:230922/1‑238 (MQ=255)
cGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGa > 2:719048/1‑218 (MQ=255)
cGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGAGGCGTACAACTGGAAAGAGGATGGCATCAGCGATa > 2:433615/1‑239 (MQ=255)
cGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGGGAAGTACAGCCGCAAGGAAAGTTCCCGGAATCTGGATGCGTACAACGGGAAAAAGGATGGcctgtctcttt > 1:1118311/1‑229 (MQ=255)
cGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAACCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGAGGGCATCAGCGATa > 2:348314/1‑239 (MQ=255)
|
CTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATCAGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGTCGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCT‑AGCGCTACGCTGGAAGGCGGGCCGAACCTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATGACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCAGCGATA > NC_000913/1473520‑1473978
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
