Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,435,704 G→A 13.2% intergenic (‑85/+56) uspF ← / ← ompN stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,435,7040GA13.2% 219.3 / 2.4 87intergenic (‑85/+56)uspF/ompNstress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific
Reads supporting (aligned to +/- strand):  ref base G (62/11);  new base A (5/8);  total (68/19)
Fisher's exact test for biased strand distribution p-value = 9.25e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACCCAGAGAGGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCT  >  NC_000913/1435467‑1435928
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                     
aCCCAGAGAGGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACGCTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGa                                                                                                                                                                                                                                      >  1:448160/1‑239 (MQ=255)
aCCCAGAGAGGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGa                                                                                                                                                                                                                                      >  1:501339/1‑239 (MQ=255)
aCCCAGAGAGGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTACCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGAAACTTTTTGTGTAATGACGGAGTTCAAATTTTTAATTTAGa                                                                                                                                                                                                                                      >  2:557196/1‑239 (MQ=255)
    aaggaaaaaTAGTAGGGCAGTGAATGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTTTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACGCTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCaa                                                                                                                                                                                                                                  <  1:988053/231‑1 (MQ=255)
     gagagGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCaaa                                                                                                                                                                                                                                 >  1:1050552/1‑239 (MQ=255)
      agagGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAag                                                                                                                                                                                                                                >  1:916756/1‑239 (MQ=255)
           cATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTTGTTATTGCCGGGGTTCACATTTTTAATTTAATTAAAAggag‑ga                                                                                                                                                                                                                          >  2:311002/1‑239 (MQ=255)
           cATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAggag‑ga                                                                                                                                                                                                                          >  1:383115/1‑239 (MQ=255)
           cATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATAAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGCTAGGGACAAGA‑TTCG‑TTCTGTTCATAAAACCTCCAGTTTTAGTATCCGCATAAAGAGTAACGCCAGATGACCATTTTTGGGTATGAACGGGGTTACAATTTTTAATTTAGATCAAAggag‑ga                                                                                                                                                                                                                          >  2:647909/1‑239 (MQ=255)
           actggtagGGCAGTGGAGGTATTACCGTCAGTAAAAGAACCTCTACAACATCTAGC‑TTTGCCTCTTCCTCAACGTGGGTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTGCACATTTTTAATTTAGATCAAaggag‑g                                                                                                                                                                                                                           <  1:1033168/234‑1 (MQ=255)
                    gCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAga                                                                                                                                                                                                                 >  2:372569/1‑238 (MQ=255)
                     cAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCCTAAAACCTCCTGTTTTAGTATCCGCATAAATGGTAACGCCAGATAAAACTTTTTGGGTAATGCCGGAGATCAAATTTTTAATTTAAATAAAAGGAG‑Gaaaaaaaaaaa                                                                                                                                                                                                                >  2:319691/1‑236 (MQ=255)
                        tGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGACATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGaa                                                                                                                                                                                                             >  1:789027/1‑239 (MQ=255)
                        tGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCCTAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCACAGGAG‑GAAGAATAAgaagaa                                                                                                                                                                                                             >  2:841421/1‑239 (MQ=255)
                        tGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑Gaaaaaaaaaacaaa                                                                                                                                                                                                             >  2:1314900/1‑233 (MQ=255)
                        tGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGaa                                                                                                                                                                                                             >  1:159011/1‑239 (MQ=255)
                        tGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGGGTAATTACGGACTTAACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGaa                                                                                                                                                                                                             >  1:599472/1‑239 (MQ=255)
                        tGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGAAAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTAAGTATCCGCTTAAAGTGAAACGCCGGATGACCCTTTTTGTGTAATGACGCAGTTAACATTTTTACTTTTAATAAAAgaag‑gagaaagtgtttctt                                                                                                                                                                                                             >  2:988053/1‑226 (MQ=255)
                        tGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCGTCCTCAACGTGGCTAATAACGCGTTGAGTTAATTCTGAATCGGGAATATCGCTAGGGCCAAAACATC‑‑TACTGTTCATAAAACCCCCTGTTTGAGTACCCGCATAAAGTGTACAGCCAGTTAACACTTTTTGTTCACTGACGAGGTTCCACTTTTTCTTTTAAATCAACGGAG‑GAAGAAAAAGCAGaa                                                                                                                                                                                                             >  2:1057169/1‑239 (MQ=255)
                          aaGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGACTCTTCCTCAACGTGGCTAATCACGCGTTGCGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTAATAAAACCTCCTGTTTTAGTCTCCGCATAAAGTGTAACGCCAGATGACCCTTTTTGTGCAATGACGGAGTTCACATTTTTAATTTATATTAAAGGAG‑GAAAAAAAAgaaatgga                                                                                                                                                                                                           >  2:1033168/1‑232 (MQ=255)
                                       cAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAAc                                                                                                                                                                                          >  1:1105184/1‑239 (MQ=255)
                                        aGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAAGGACGGAGTTCACATTTTTAATTTAAATCAAAGAAG‑GAAAAAAAAACAGAAAA‑‑A‑AAC‑CGcaaaaaaa                                                                                                                                                                                         >  2:25439/1‑232 (MQ=255)
                                        aGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGAATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAACAGAAAA‑‑A‑ACC‑CGCCATaaaa                                                                                                                                                                                         >  2:929561/1‑237 (MQ=255)
                                          gAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGATTAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGc                                                                                                                                                                                       >  1:1216177/1‑239 (MQ=255)
                                             aTGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGATTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCa                                                                                                                                                                                                                                   <  2:693883/197‑1 (MQ=255)
                                             aTGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGTTCa                                                                                                                                                                                                                                   >  1:693883/1‑197 (MQ=255)
                                                  ccttcgCATCA‑CAATCTTTTGCCTCTTCCTAAACGGGGTTAACCCCGGTTGGAGTTAATTTTAAAGGGAAAAATTCGA‑AGGGAAAAAA‑ATTGTTTCTGTTAAAAAACCCTCCTTTTTTATTATCCCAAAAAATTGTAACGCAAGATGACATTTTTTGTGTAATGAAGGAGTTCACATTTTTAATTTAGAAAAAAGGAG‑AAAAAAAAAGAAAAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCagga                                                                                                                                                                               <  1:1314900/234‑1 (MQ=255)
                                                     ctGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAACTATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGGGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACACCGGGCAggagga                                                                                                                                                                            >  1:891971/1‑239 (MQ=255)
                                                      tGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGAt                                                                                                                                                                           >  1:127687/1‑239 (MQ=255)
                                                      tGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCGGTTTTAGTATCCGCATAAAGAGTAACGCCAGTTGAACCTTTTTTGGTAATGACGGAGTTCACATTTTTAATTTAGATATAAGGAG‑GAGGAATAAGGAGAAAA‑‑A‑GCC‑CGCCAGAACAGCGGGCagcgggct                                                                                                                                                                           >  1:688068/1‑233 (MQ=255)
                                                          tcatcaATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGTG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAAAAGCGGGCAGGCGGATTTAg                                                                                                                                                                       >  1:657972/1‑239 (MQ=255)
                                                             tcaATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGa                                                                                                                                                                      >  1:413481/1‑237 (MQ=255)
                                                                            ttCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGCCAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GACGAATAAGAAGAAAA‑‑A‑GCC‑CGCCATAAAAGCGGGCAGGAGGATTTAGAACTGATAAACCAGAcc                                                                                                                                                      >  2:287996/1‑239 (MQ=255)
                                                                            ttCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGGGGGCAGGAGGATTTaaatcagtaaaaacaaaac                                                                                                                                                      >  2:478160/1‑221 (MQ=255)
                                                                            ttCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CCCCATAACACCGGGCAGGAGGATTTAGAACTGATAAACCAGAcc                                                                                                                                                      >  1:1293941/1‑239 (MQ=255)
                                                                                    cGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTACTATCCGCATAAAGCGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGCTCAACGTAG‑GAAGAATAAGCAGACAA‑‑A‑GCC‑CGCCATAACAGCGGGAAGGAGGATTTATAACGAAAAAACAAAACCAAAACCGa                                                                                                                                              >  2:323782/1‑239 (MQ=255)
                                                                                        gCTAATCACGCGTTGAGTTAATTCTGAATCGGTAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAAACTCCTGTTTTAGTATCCGCATAAAGGGTAACGCAAGATGACACTTTTTGCGTAATAACGGAGTTCACATTTTTAATTTAGATTAAAGGAG‑GAAGAATAACCGGAAAA‑‑A‑GGC‑CGCCATAACACCGGGCCGGAGGCATTAGAAAGGAAAAACCCAACCAAAAAGGACAat                                                                                                                                          >  2:427218/1‑239 (MQ=255)
                                                                                        gCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAAAAGCGGGCAGAAGGATTTAGAACTGATAAACCAAACCTAAATCGACAat                                                                                                                                          >  1:170404/1‑239 (MQ=255)
                                                                                                   gTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTATTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTATTGACGGAGTTCACATTTTTACTTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATACCACCGGGACGGAGGATTTAGAACTGATAAACCACACCTAAAGCGAAAATACAATCGGTa                                                                                                                                >  1:362377/1‑238 (MQ=255)
                                                                                                   gTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAAAACTGAAAAACCAACCCAAAACCGACAaaatacccggaaa                                                                                                                               >  2:73320/1‑230 (MQ=255)
                                                                                                      gAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAgaga                                                                                                                            >  1:1282860/1‑239 (MQ=255)
                                                                                                                                    ggACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGGCATCt                                                                                               >  1:1333550/1‑238 (MQ=255)
                                                                                                                                     gACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGGTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGCGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGCGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATatca                                                                                                                                      >  1:1192307/1‑198 (MQ=255)
                                                                                                                                         aGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATcc                                                                                         >  1:684136/1‑239 (MQ=255)
                                                                                                                                                g‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAAAAGCTGTCATCTTCATCCAACAgg                                                                                   >  1:194325/1‑239 (MQ=255)
                                                                                                                                                g‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAAAGATTCCATTGGCAGCGTAGAACATGCCAAATTAATCCaaaaag                                                                                   >  2:564823/1‑235 (MQ=255)
                                                                                                                                                g‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGAAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGGGATGCAATTGGCAGCCAAGAAGCTGTCATCTTCATACAACAgg                                                                                   >  1:601960/1‑239 (MQ=255)
                                                                                                                                                  ttCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCACCAGGt                                                                                  >  1:4304/1‑239 (MQ=255)
                                                                                                                                                    cTGTTCATAAAACCTCATGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTAACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GAC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGGCATCTGCATCCAACCGGCTg                                                                                >  1:292442/1‑239 (MQ=255)
                                                                                                                                                       ttCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACaa                                                                                                                                           >  1:1299409/1‑177 (MQ=255)
                                                                                                                                                       ttCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGGTGAtt                                                                             >  2:1266257/1‑239 (MQ=255)
                                                                                                                                                       ttCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGGAGAAGCTGTCATCTTAATCCAAAAGGtgaaat                                                                             >  2:427171/1‑234 (MQ=255)
                                                                                                                                                       ttCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAAGGATGCCATTGGACGCGTAAAACCTGTCACCTTCATCAAACAGGTTGAtt                                                                             >  2:267100/1‑239 (MQ=255)
                                                                                                                                                       ttCATAAAACCTACTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAACGACAATATCATCGATAGAGATGCCATTAGCAGCGTAAAAGATGAACTCTTCAACCAACAGGGTGAtt                                                                             >  2:508824/1‑239 (MQ=255)
                                                                                                                                                         aaTAAACCCTCTTTTTTTAGTACCCGAATAAGGTGTACCGCAAGAGGACATTTTTTGTGAAATGACGGAGTTCACATTTTAAATTTAGATAAAGGGAG‑GAAAAAAAAGAAAAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGa                                                                                                                                                                      <  1:175182/147‑1 (MQ=255)
                                                                                                                                                                 ctcctGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAAAAGCTGCAATATTACTCAAACAGGTTGAtttttaatctaa                                                                   >  2:937782/1‑231 (MQ=255)
                                                                                                                                                                 ctcctGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGGAAAAGCTGTCATCTTCATACAAAAGGTGAATTTTATAATCaa                                                                   >  2:699728/1‑239 (MQ=255)
                                                                                                                                                                 ctcctGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGAAGAAGATGTCATATTCATCCAAAAGGTTGAATTTATAGTaaa                                                                   >  2:431015/1‑239 (MQ=255)
                                                                                                                                                                   cctGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAAc                                                                                                                                                            >  2:175182/1‑148 (MQ=255)
                                                                                                                                                                    ctGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCaa                                                                                       >  1:818669/1‑216 (MQ=255)
                                                                                                                                                                    ctGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGt                                                                >  1:35653/1‑239 (MQ=255)
                                                                                                                                                                                 cGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGtt                                                   >  1:187176/1‑239 (MQ=255)
                                                                                                                                                                                 cGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGGGGACAGGtt                                                   >  1:398327/1‑239 (MQ=255)
                                                                                                                                                                                      aaaattgaaaccgagagagcacTTTTTGGGGAAAGGAGGGATTCAATTTTTTAATTTAAAAAAAAGGGGAGAAAAAAAAGCAAAAAA‑‑A‑CCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTa                                               <  1:427171/220‑1 (MQ=255)
                                                                                                                                                                                        agtaaacctccagatccattttttgGTGTAAGGACGGAGTCTACATTTTTGATTAAAATAAAAGGAA‑GAAAAAAACACAGAAAA‑‑G‑GCC‑CGCCATAACAGCTGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTATAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGTACATGTTTTTATTg                                            <  1:287996/219‑1 (MQ=255)
                                                                                                                                                                                                  cAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAg                                  >  1:1158779/1‑239 (MQ=255)
                                                                                                                                                                                                   aattatatttttttGTTAAATTAAGGA‑TTCAATTTTTTAAAGTAAAGAAAAGGGG‑GAAAAAAAAAAAAAAAA‑‑ACGCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGt                                 <  2:4304/230‑1 (MQ=255)
                                                                                                                                                                                                    gATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAATGGAG‑GCAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAATAGCGGGCAGGAGGATTTAGACCTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGCGGACATGTTTTTATTGAAATAGTAAGTc                                >  1:1236475/1‑239 (MQ=255)
                                                                                                                                                                                                    gATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAAAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCACAAGGTTGATTTTATAGTCAACGTCGGTGGAAGTGTTTTTTTTaaaaaaaaaagtg                                >  2:977908/1‑230 (MQ=255)
                                                                                                                                                                                                            tttttGTGTAATGACGGAGTTCACATTTTTAATTTAGATCaa                                                                                                                                                                                                                                  <  1:1153389/42‑1 (MQ=255)
                                                                                                                                                                                                            tttttGTGTAATGACGGAGTTCACATTTTTAATTTAGATCaa                                                                                                                                                                                                                                  >  2:1153389/1‑42 (MQ=255)
                                                                                                                                                                                                              tttGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAATTCGCGCCAatat                      >  1:1335539/1‑239 (MQ=255)
                                                                                                                                                                                                              tttGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGGGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAata                       >  1:409629/1‑238 (MQ=255)
                                                                                                                                                                                                                 ttaaaaagggggttttcaatttgttaattaaGAAAAAGGGAG‑AAAAAAAAAGAAAAAAA‑‑G‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCgg                   <  2:1282860/216‑1 (MQ=255)
                                                                                                                                                                                                                    tAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGGGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGt                >  1:694489/1‑239 (MQ=255)
                                                                                                                                                                                                                      agagcgagtgtaatttttttAATTAAGAAAAAAGGAG‑GAAAAAAAATAAGAAGA‑‑C‑GCC‑CGGCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGATAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTAt              <  2:116161/224‑1 (MQ=255)
                                                                                                                                                                                                                      aTGAGGGAGTCCACTTTTTAAATTAAAATCAAAGGAA‑GAAGAAAAAGCAGAAAA‑‑A‑CCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTAt              <  1:372569/239‑1 (MQ=255)
                                                                                                                                                                                                                      aTGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGGGGACATGTTTTTATTTAAATAGTAATTCGCTCCAAAATAGCCGTAt              >  2:185878/1‑239 (MQ=255)
                                                                                                                                                                                                                       tggcggagtcattttttttAATTTAAAACAGAGGAA‑AAAAAAAAAAGAAAAAA‑‑A‑CCCACGCCATAACAGCGGGCAGGGTGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTAt              <  2:127687/225‑1 (MQ=255)
                                                                                                                                                                                                                           tgatttcaattttttAATTTAGAAAAAGGGGA‑GAAAAAAAAAAAAAAAA‑‑C‑GCC‑CGCCATAACAGGGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGGCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAAc         <  2:413481/229‑1 (MQ=255)
                                                                                                                                                                                                                           ggatttaaaaTTTTAAATTTAAAACAAGGGAG‑AAAGAAAAAGCAAAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTTATAAACCAGTCCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTTGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAAc         <  1:319691/230‑1 (MQ=255)
                                                                                                                                                                                                                            gAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTAAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTTGCGCCATTATCGGCGAATTTAAcc        >  1:925518/1‑239 (MQ=255)
                                                                                                                                                                                                                              tcacacaTTTTAAATTTAGCAAAAAGG‑G‑GAA‑AAAAAGAAGAAAAACA‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTTGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCa       <  1:427218/235‑1 (MQ=255)
                                                                                                                                                                                                                              gTTCAAATTTTAAATTGAGAACAAGGGGA‑GAAAAAAAAAAAAAAAA‑‑C‑CCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCa       <  1:699728/238‑1 (MQ=255)
                                                                                                                                                                                                                              atctattttttttATTTAAAGAAAAGGGA‑GAAAAAAAAAAAAAAAA‑‑A‑CCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCa       <  2:1275353/231‑1 (MQ=255)
                                                                                                                                                                                                                               ttCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGa     >  1:1275353/1‑239 (MQ=255)
                                                                                                                                                                                                                                  acaTTTTTAATTTGAAGAAAAGGAG‑GAAAAAAAAGAAAAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCt  <  1:478160/239‑1 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                     
ACCCAGAGAGGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATC‑TTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGA‑ATCG‑TTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAG‑GAAGAATAAGCAGAAAA‑‑A‑GCC‑CGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCT  >  NC_000913/1435467‑1435928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A