Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A20 F18 I30 R1
|
17 |
58.5 |
1916916 |
96.3% |
1845990 |
148.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009273 |
3,370,282 |
C→T |
W166* (TGG→TGA) |
sspA ← |
stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,370,282 | 0 | C | T | 97.3%
| 223.8
/ NA
| 76 | W166* (TGG→TGA) | sspA | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (32/41); minor base G (1/1); total (34/42) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCG > CP009273/3370138‑3370423
|
agactacttCCGGCCGAGATGCATTTCACGTTCTGCTTCAGTTTAAGAAGCAAGGAACGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCGCTGTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTcaca < 1:563935/141‑1 (MQ=255)
gATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCAcag > 1:372759/1‑149 (MQ=255)
aTTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGGCGACGTCAcagc > 2:844155/1‑149 (MQ=255)
aTTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCAcagc < 2:904131/149‑1 (MQ=255)
aCTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGACGCAAGGAAAGCGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCg < 1:797763/149‑1 (MQ=255)
cTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCgg < 1:360903/149‑1 (MQ=255)
tCCGGCCCATACGCATTTCACCTCCCGCACCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGa < 2:49393/149‑1 (MQ=255)
tCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGa < 1:315178/149‑1 (MQ=255)
tCCGGCACAGAGGCATTTCACGTTCTGCTTAAGTTATAGAAGCAAGGAAAGAGTAACGCTCAAAGACGCGGGTGCTAAAGCCATTCAGCTCTTTCGCACCCGGGCCGCTGCACAAGATGCCCAGTTGAGGAAGACGGCACGACAGCgca > 2:422059/1‑147 (MQ=255)
ccAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGa > 1:881018/1‑149 (MQ=255)
cAGACGCATTCCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGAt < 1:209124/149‑1 (MQ=255)
aCGTTCTGCTTCAGTTAAAGGAGCATGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCTGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCa < 1:579516/149‑1 (MQ=255)
gTTCTGCTTCAGTTAAAGAAGCGAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATTGCCTTTCAGCTCTTTCGCACCGGGGCCGCTGCACTCGATGCCCAGTTGCGGCAGACGTCACGGCAGCGGAGCAATATAGCAATCGACCAgg < 1:604163/149‑1 (MQ=255)
gCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGCCGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGaa < 2:765415/149‑1 (MQ=255)
gCTTCAGTTAAAGAAGCAAGCAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGaa < 1:842815/149‑1 (MQ=255)
cTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAAc > 1:821638/1‑149 (MQ=255)
ttCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACt > 1:170479/1‑149 (MQ=255)
ttAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCg > 1:889477/1‑149 (MQ=255)
ttAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCg > 2:642267/1‑149 (MQ=255)
ttAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGAGCCGCTGAACCCGATCCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCCAGACAGCAATCGACCAGGCCGAACCCATCg > 2:270062/1‑149 (MQ=255)
tcaaaGAAGAAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATAGAGCCTGTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCg < 1:69306/147‑1 (MQ=255)
cagaagCAATGAAAGAGCCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGCTGCTGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTc < 1:422059/148‑1 (MQ=255)
cAAGGACAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAg > 2:114718/1‑149 (MQ=255)
cAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGGTGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCACGATAGCAATCGGCCGGGCTGAACTCATCGCTCAGGAAg > 1:45393/1‑149 (MQ=255)
cAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAg > 2:114740/1‑149 (MQ=255)
cAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCACTAACTCAGCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAg > 1:658722/1‑149 (MQ=255)
ggAAAGAGGCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTAc < 1:266312/149‑1 (MQ=255)
gAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCACTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCCGGCTGAACTCATCGCTCAGGAAGTACg > 2:342237/1‑149 (MQ=255)
aaaGCGGCACGCTCAAAGACGCGGGTCATATATCCTTTCAGCTCTTTCGCAGCCTGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACTAGGCTGAACTCACCGCTCAGGAAGTACgg < 1:600909/149‑1 (MQ=255)
aaGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGc < 1:76066/149‑1 (MQ=255)
actcTCAAAGCCGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCACTGAACTCGATGCCCAGTTGCGGCAAACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGCACGGCTTCTGAc < 1:688154/146‑1 (MQ=255)
tCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACCCATCGCTCAGGAAGTACGGCTTCTGACCGaa > 1:243992/1‑149 (MQ=255)
cAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAg > 1:194282/1‑149 (MQ=255)
aaaGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGACCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGa > 1:226973/1‑149 (MQ=255)
cgcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgc < 2:221485/149‑1 (MQ=255)
cgcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAAACGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgc < 1:424130/149‑1 (MQ=255)
gcgTGTCATATAGCCTTTCATCTCTGTCGCACCCGCGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGTAGCAAGATAGCAATCGACCAGGCGGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcg < 2:571670/149‑1 (MQ=255)
gcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcg > 2:383427/1‑149 (MQ=255)
gggTCATATAGCCTTTCAGCTCTTTCGAACCGGGGCCGCTGAACTCGATGCCCAGTTGCGACAGACGACACAGCAGCGGACCAAGATAGCAATCGCGCAGGCTGAACCCATAGCTCAGGGAGTAAGGCTTCTGACCGCAGACCgggccg > 2:323873/1‑145 (MQ=255)
gTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAAt > 1:448993/1‑149 (MQ=255)
tCATATAGCCTTTCCGCTCTTTCGCCCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATc < 2:661152/149‑1 (MQ=255)
cATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCg < 1:170100/149‑1 (MQ=255)
taGCCTTTCAGCTCTTGCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcag < 1:99160/149‑1 (MQ=255)
aGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcagc > 2:637011/1‑149 (MQ=255)
cTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGGACTCCTCGTTCGGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGt > 1:73759/1‑149 (MQ=255)
ccAGCTCGTCCCCACCCGGGCCGCTCAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCCGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttct < 1:721890/148‑1 (MQ=255)
cAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttctt < 1:107756/149‑1 (MQ=255)
aGCTCTTTCGCACCCGGGCCGCTGACCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCTAATACCGGCGCAATCGCCAGCAGttcttc < 2:923565/149‑1 (MQ=255)
aGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttcttc < 2:307296/149‑1 (MQ=255)
aGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGAGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTGCTGACCGAAAACCGGCGCAACCGCGCGCAGttcttc > 2:706532/1‑149 (MQ=255)
tctTTCGCCCCCGGGCCGCTGAACTCGATGCTAAAGCGCTTCATACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGAACGGCTTCTGAACATAGAACGGAGCAACCGTAAGCAGTTCTTcgcg < 2:671919/149‑1 (MQ=255)
tccttcccccccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTcgcg < 1:26089/140‑1 (MQ=255)
gCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAAGCGCCAGCAGTTCTTCGCGCAGTTg > 2:619294/1‑149 (MQ=255)
ccccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGACAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCt < 1:313053/148‑1 (MQ=255)
aCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCCGTTCTTCCCGCAGTTGCt > 2:192611/1‑149 (MQ=255)
aCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCt > 1:768304/1‑149 (MQ=255)
cccGGGCCGCTGAACTCGATGCCCAGTCGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCtt < 1:371626/149‑1 (MQ=255)
cGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGCCCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGGGCAGtagactcc > 2:647484/1‑142 (MQ=255)
ggCCGCTGAACTCGACGCGCCGTTGCGGCTGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCACCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGt < 1:18972/149‑1 (MQ=255)
gCTGACCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCgg < 1:417032/149‑1 (MQ=255)
gCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCCGTTCTTCGCGCAGTTGCTTACGTGCgg > 1:112896/1‑149 (MQ=255)
tccaTGCCCAGGTGCGGCAGCAGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTCCGGCTTCTGACCGAAGACCGGCGCAAACGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGc < 1:64834/146‑1 (MQ=255)
tCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGc < 1:114740/149‑1 (MQ=255)
tCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGc < 1:114718/149‑1 (MQ=255)
gATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCtt < 2:821638/149‑1 (MQ=255)
gATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCtt < 2:860703/149‑1 (MQ=255)
gATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGGTCTTCGCGCGATTGCTTACGTGCGGCGTCTGcct > 1:787111/1‑147 (MQ=255)
aTGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTc > 1:835402/1‑149 (MQ=255)
aTGCCCAGTTGCGGCAGACGGCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTc < 1:534530/149‑1 (MQ=255)
ccAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGaa > 1:397573/1‑149 (MQ=255)
cAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAg < 2:37106/149‑1 (MQ=255)
cAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAg > 1:356813/1‑149 (MQ=255)
cAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAg < 1:723816/149‑1 (MQ=255)
cGGCTGACGTAACAGCAGCCGAGCAAGATACCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAAc < 2:187767/149‑1 (MQ=255)
ggCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAAcc > 1:605984/1‑149 (MQ=255)
gCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCg > 1:38766/1‑149 (MQ=255)
|
AGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCG > CP009273/3370138‑3370423
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
