Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A19 F18 I30 R1
|
7 |
69.6 |
2274803 |
97.7% |
2222482 |
146.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009273 |
3,370,282 |
C→T |
W166* (TGG→TGA) |
sspA ← |
stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,370,282 | 0 | C | T | 98.6%
| 226.2
/ NA
| 71 | W166* (TGG→TGA) | sspA | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base T (29/40); minor base G (1/0); total (31/40) |
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACAGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCG > CP009273/3370136‑3370423
|
aCAGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTca < 2:934596/149‑1 (MQ=255)
aCAGACTAACTCCGGCCCAGACGCATTGCACGTTCTGCTACAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTca < 2:306790/149‑1 (MQ=255)
cAGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTcac > 2:107961/1‑149 (MQ=255)
aCTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAGAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTcaca > 1:112189/1‑143 (MQ=255)
tCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGACGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCCCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑Ga < 2:125490/149‑1 (MQ=255)
tCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGCACTCGATTCCCCGTTGCGGCAGACGTCACAGCCGCG‑Ga > 2:881436/1‑149 (MQ=255)
tCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑Ga < 2:100188/149‑1 (MQ=255)
ccAGCCGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑Ga < 1:614591/143‑1 (MQ=255)
ccAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAGCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑Ga < 1:557016/143‑1 (MQ=255)
ccAGACGCATTTCACGTTCTGCTACAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGa > 2:776404/1‑149 (MQ=255)
aGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGCGTCACGCTGAGAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATa < 2:227441/149‑1 (MQ=255)
aGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCCGACGTCACAGCAGCG‑GAGc > 1:1026631/1‑143 (MQ=255)
gACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAg > 2:979917/1‑149 (MQ=255)
tttCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCg > 2:134037/1‑149 (MQ=255)
tCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCACAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCa > 1:534313/1‑143 (MQ=255)
aCGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCa > 2:319983/1‑149 (MQ=255)
cGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATc < 1:400977/143‑1 (MQ=255)
gTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCAGCGCAGGG‑GAGCAAGATAGCAATCGACCCgg > 2:388676/1‑149 (MQ=255)
gTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAgg < 2:137641/149‑1 (MQ=255)
cTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCCGGTGGCTATACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTg > 2:287455/1‑149 (MQ=255)
gcctCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCAACCAGGCTGaa < 2:1052739/146‑1 (MQ=255)
gCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCGCAAAGACGCGGGTCAGATAGCCTTGCAGCTCTGTCGCACCCGGGCCGCTGAACTCGATGCCCAGGTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGaa < 2:540933/149‑1 (MQ=255)
ttCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCCGCTCTTTCGCGCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACt > 2:984882/1‑149 (MQ=255)
cAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATAAAAGCAAACGCCGCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCa < 2:34312/149‑1 (MQ=255)
gTTAAAAAAGCAAGGAAAGAGTCACGCTCAAAGACCCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATc < 2:563049/149‑1 (MQ=255)
aagaagCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCa < 1:377140/143‑1 (MQ=255)
aagCAAGGACAGAGTCACGCGCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAgg < 2:741777/149‑1 (MQ=255)
aagCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGTTAGCAATCGACCAGGCTGAACTCATCg < 1:279845/143‑1 (MQ=255)
gCAAGGAAAGAGTCACGCTCAAAGACGCGGGGCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCGAGATAGCAATCGACCAGGCTGAACTCGTCGcc > 1:459500/1‑142 (MQ=255)
cGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAcc < 2:495905/149‑1 (MQ=255)
cGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTGTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAcc < 2:40131/149‑1 (MQ=255)
gCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTc < 1:764985/143‑1 (MQ=255)
cAAAGACGCGGGTCATATAGCCTTTCCGCTCTTTCGCACCCGGGCCGCTGACCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGa < 1:958914/143‑1 (MQ=255)
aaaGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAc > 1:193368/1‑143 (MQ=255)
aGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGGTGGCATTCGACCAGGCTGACCTCATCGCCCAGGAAGTACGGCTTCTAACCGAAAAcc > 2:977487/1‑149 (MQ=255)
aGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCg < 1:1035468/143‑1 (MQ=255)
aCGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCgg > 2:711226/1‑149 (MQ=255)
cgcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgc < 2:289919/149‑1 (MQ=255)
gcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcg < 2:992369/149‑1 (MQ=255)
gcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCGTCTGACCGAAGa > 1:839372/1‑143 (MQ=255)
gggTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGGCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGCACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCa > 2:652089/1‑149 (MQ=255)
ggTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCCGTGGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCaa > 2:233212/1‑149 (MQ=255)
cATATACCCTTTCAGCTCTTCCGCACCCCGGCCGCTGAACTCGATGCCCAGTAGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcg < 1:121911/143‑1 (MQ=255)
atatAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGGAGACCGGCCCAATCGc > 2:331769/1‑149 (MQ=255)
ctcgCCTTCCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTATGACCGAAGACCGGCGCAATCGCca < 2:595985/146‑1 (MQ=255)
ataGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATGGCAATCGACCAGGCTGAACCCATCGCTCAGGAAGGACGGCTTCTGACCGAAGGCCGGCGCAGACGCca > 2:36786/1‑149 (MQ=255)
taGCCTTTCAGCTCGTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGCCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcag < 2:776758/149‑1 (MQ=255)
ccTTTCAGCTCTTTCGCACCCGGGCCGCTCAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGATCGAAGACCGGCGCAATCGCcagcag > 2:723354/1‑149 (MQ=255)
ccTTTCACCTCTTTCGCCCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGc < 1:540557/143‑1 (MQ=255)
tttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGtt < 2:933151/149‑1 (MQ=255)
tttCAGCTCTTTCGCACCCGGGCCGCTGAACCCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCca < 1:344110/143‑1 (MQ=255)
tttCAGCTCTTTCCCACCCGGGCCGCTGAACTCGATGCCAAGTTGCGGAAGACGCTACAGCAATG‑GATCAAGGTAGCAATCGACCAGGCTGAACTCATCGACCAGGAAGTACGGCTCCTGACCGAAGCCCGGCGCCATCGCca > 1:656138/1‑143 (MQ=255)
ttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttc < 2:355814/149‑1 (MQ=255)
gCACCCGGGCCGCTGACCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTg < 2:783207/149‑1 (MQ=255)
cACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGGTCTTCgcgc > 1:435381/1‑143 (MQ=255)
ccccGGGCCGCTGAACGCGACGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCa < 1:498395/142‑1 (MQ=255)
ggCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGc < 1:351880/143‑1 (MQ=255)
cTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCGGCAGTTCTTCGCGCAGTTGCTTCCg > 1:596199/1‑143 (MQ=255)
cTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTGGCGCGGTTGGTTACg > 1:430287/1‑143 (MQ=255)
cTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACg > 1:865950/1‑143 (MQ=255)
ggAACGCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCa < 2:1012618/148‑1 (MQ=255)
gctctctctGCTCAGTTGCTGCAGACGTCACAGCAGCG‑GAGCAAGACAGCAATCGACCAGGCGGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCAt < 2:269232/141‑1 (MQ=255)
aCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCg < 1:922229/143‑1 (MQ=255)
aCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTGCTTCGCGCAGTTGCTtacgtacg > 1:393670/1‑143 (MQ=255)
cTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCgg < 1:836609/143‑1 (MQ=255)
tCGATGCCCAGTTGAGGCAGACGTCAC‑GAAGTGCCAACTATATAGCAATAGACCAGGCTGAACTCATCGCTCAGGGAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGc > 2:872954/1‑149 (MQ=255)
cccAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGa < 2:530732/149‑1 (MQ=255)
cAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGTAGTTGCTTACGTGCGGCATCTGCTTCAGAAg > 2:47855/1‑149 (MQ=255)
ttGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAg > 1:653547/1‑143 (MQ=255)
gCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCg < 2:123598/149‑1 (MQ=255)
cAGGCGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGACCTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTg < 1:58607/143‑1 (MQ=255)
|
ACAGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCG > CP009273/3370136‑3370423
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
