Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A19 F18 I40 R1
|
9 |
113.1 |
3678852 |
98.0% |
3605274 |
146.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009273 |
3,960,102 |
G→T |
R109L (CGC→CTC) |
rho → |
transcription termination factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,960,102 | 0 | G | T | 96.8%
| 280.4
/ ‑6.6
| 97 | R109L (CGC→CTC) | rho | transcription termination factor |
| Reads supporting (aligned to +/- strand): ref base G (2/0); major base T (50/41); minor base C (3/0); total (56/41) |
| Fisher's exact test for biased strand distribution p-value = 2.54e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAA > CP009273/3959958‑3960241
|
gatTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGACCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGGGAActctgt > 1:1497292/1‑147 (MQ=255)
atTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTAtt < 1:41166/149‑1 (MQ=255)
tGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTg < 1:1452200/149‑1 (MQ=255)
tGGCTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTg < 1:1902908/149‑1 (MQ=255)
gTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTgcg < 1:579851/149‑1 (MQ=255)
gTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTCTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTAt > 2:561126/1‑143 (MQ=255)
tttCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCTGCCCCCGCGCTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTAtt > 2:1055071/1‑143 (MQ=255)
tttCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTgccc > 1:1441444/1‑147 (MQ=255)
tttCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCCCTGGTAAGATTCGCCCGCCGAAAGAAGGGGAACTCTATTTTgcgc > 1:1320059/1‑149 (MQ=255)
tttCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACGGGGGATACCATCGCTGGTAGGATTCGCCCGCCGAAAGAAGGGGAACTCTATTTGgcgc > 1:1320386/1‑149 (MQ=255)
cctccGTTCCGCAGACAGCTCCGCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCTGAAAGAAGGTGAGCTCTATTTTGCgctgc < 1:1208604/149‑1 (MQ=255)
ctccGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGGCATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTgc > 2:865256/1‑143 (MQ=255)
tccGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGGGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGACGGTGAACCCTATTTTGCGctgctg > 1:136793/1‑149 (MQ=255)
ccGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTgcgc > 2:1234272/1‑143 (MQ=255)
ccGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGa > 1:1385991/1‑149 (MQ=255)
ccGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTGgcgc > 2:318928/1‑143 (MQ=255)
cGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTCTCAACCTCCGCACTGGTGCTACCATCTCTGGTAACATTCGCCCGCCGAAAGAAGGTGAACCATCTTTTCCgct > 2:1144386/1‑143 (MQ=255)
ttCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAg < 1:1668476/149‑1 (MQ=255)
ccGCAGACAGCCCCTACCTCGCCAGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATTCCATCTCTGGTAGGATTCGCCCGCCGAAAGAAGGTGAATGCTATTTTACgatgcag > 2:1202942/1‑141 (MQ=255)
cGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACCCTATTTTGCGCTGCTGa > 2:306959/1‑143 (MQ=255)
cAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTa > 2:1651954/1‑143 (MQ=255)
tCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTaa > 1:1097354/1‑149 (MQ=255)
tCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCATAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGCTaa > 1:73355/1‑149 (MQ=255)
ccTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTACCGAAGTTAACTTCg > 1:693996/1‑149 (MQ=255)
cTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGa < 1:542456/149‑1 (MQ=255)
cTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACACTATTTTGCGCTGCTGCAAGTTAACGAAGTTaa > 2:783039/1‑143 (MQ=255)
ccGCCGGTCCTGATGACATCTACGTTTCCCCGAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGAc < 1:502101/148‑1 (MQ=255)
cGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTATGGTAAGGTTCGCCCGACAAATTTTGGTGGACTCTATTTTGCGCTGCTGAAAGTTACCGAAGTTAAATTCGACa > 1:838269/1‑149 (MQ=255)
gCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACAGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGGGAACTCTATTTTGCGCGGCTGAAAGTTAACGAAGTTAACTTccccaa > 1:1268154/1‑144 (MQ=255)
gatgaCATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGaaaa > 1:1151684/1‑149 (MQ=255)
atgaCATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTGTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGCCAAAccg > 2:739148/1‑142 (MQ=255)
gaCATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGc < 1:264139/149‑1 (MQ=255)
cATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGaaa < 2:1328634/143‑1 (MQ=255)
aTCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAAATCTATTTTTCGCTGCTGACAGTTAACGAAGTTAACTTCGCAAAACCTTAAAACGcccc > 1:423425/1‑148 (MQ=255)
aTCTACGTTTCCCCTAGCCAAATCCGCCGATTCAACATCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCACCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGCAAGTTAACGAAGTTAACTTCGACAAACCTGaaaa > 2:66097/1‑143 (MQ=255)
tCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAAc < 2:124295/143‑1 (MQ=255)
tCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAAc < 2:1220755/143‑1 (MQ=255)
tccGTTTCCCCTAGCCAAATCCGCCGTTTCAACCGCCGCCCTGGTGATACCATCTCTGGTAAGCTTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGc < 2:1377853/141‑1 (MQ=255)
cGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGcaaca > 1:1089609/1‑149 (MQ=255)
tttCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCGCTGGTGATACCATCTCTGGTGAGATTCGCCCGCGGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGCAGTTAACTGCGACCAACCTGAAAGCGCCCGcacgaga > 1:552496/1‑144 (MQ=255)
tttCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTCACTTCGACAAACCGGaaacaccccgc > 2:1577067/1‑135 (MQ=255)
tttCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCACGCAACaaa > 1:258370/1‑149 (MQ=255)
ccccTAGCCAAATCCCACGTATAAGCCTTCTCTCTGGTGATAACTGCAGGAATAATATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATc < 1:1857811/149‑1 (MQ=255)
cccTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGCAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCCGAAAACGCCCGcaaca > 2:1449010/1‑143 (MQ=255)
cTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACaaa > 2:1530017/1‑143 (MQ=255)
gCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTGCGACAAACCTGAAAACGCCCGCAACAAAATc < 2:689104/143‑1 (MQ=255)
cccAAATCCGCCGTTTCAACCTCCGCACTGGTCATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCttt < 1:313947/148‑1 (MQ=255)
ccAAATCCGCCGTTTCAACCTCCGCACTGGTGCTACTGTCTCAGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAATTTCGACCAACCTGAAAACGCCCGCAACGAAATCCCCTTTg > 1:934519/1‑149 (MQ=255)
ccAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACGAAGTCCTCGTTg > 1:1663270/1‑149 (MQ=255)
ccAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTg < 1:379999/149‑1 (MQ=255)
cAAACCAGCCGTTTCAACCGCCGCGCTGGAGATGCCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGCGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTga < 1:73714/149‑1 (MQ=255)
aaTGCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGCTTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCCGAAAACGCCCGCAACAAAATCCTCTTTgaga < 1:697376/149‑1 (MQ=255)
cgccgTTTCGACCTCCGCACTGGTGATCCCATCTCTGCTAAGATTCTCCCGCAGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAACCCTCTTTga < 2:751043/143‑1 (MQ=255)
gccgTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTa < 1:96756/149‑1 (MQ=255)
gccgTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTa > 1:656472/1‑149 (MQ=255)
tttCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTCAACTTCGACGAACCTGCAAACGCCCGCAAGAAAATCCTGTTTGAGAACTTGAcgc > 1:758737/1‑147 (MQ=255)
accccccccACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAATTCCTCTTTGAGAACTTAACCCCGCt < 1:1139703/141‑1 (MQ=255)
aaCCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCCCt > 1:1110829/1‑149 (MQ=255)
aCCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAAcc < 2:1180018/143‑1 (MQ=255)
tCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCAc < 1:1088732/149‑1 (MQ=255)
cGCACTGGTGATACCATCTCTGGTAAGATTCGCTCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCt < 2:8614/143‑1 (MQ=255)
cGCACTGGTGAGACCATCTCTGGTAAGATTCGGCCGCCGAAAGAAGGTGAACTCTATTGTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCt < 2:329963/143‑1 (MQ=255)
cACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCaa < 1:215582/149‑1 (MQ=255)
aCTGGGGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCaaa < 1:615092/149‑1 (MQ=255)
gTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCa > 2:75567/1‑143 (MQ=255)
gTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCa > 2:526496/1‑143 (MQ=255)
gTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCa > 2:1585009/1‑143 (MQ=255)
gTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGAGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAActct > 1:845537/1‑149 (MQ=255)
tGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGTGAACTTAACCCCGCTGCACGCAAACtctc < 1:1344248/149‑1 (MQ=255)
gATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCaaa > 2:743361/1‑143 (MQ=255)
aTACCATCTCTGGTAAGATTAGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACATGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCGGGTGCACGCAAACTCTCGt > 1:1066802/1‑149 (MQ=255)
aTACAATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTAAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGGACTTAACCCCGCTGCACGCAAAc > 2:104522/1‑143 (MQ=255)
aCCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGGACGCAAGCTCTGGTCt > 1:1586279/1‑149 (MQ=255)
aCCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCt > 1:523692/1‑149 (MQ=255)
aCCATCTCTGGTAAGAGTCGCCCGCCGAAAGAAAGTGGACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAGCCCCGCTGCACGCAAACTCTCGTCt > 1:1216292/1‑149 (MQ=255)
aTCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTTTTTTTTTTTTTGTTAACGAAGTGACCTTCGACAAACCTGAAGACGCCCGCAACAGAATCCTCTTTGAGACCTTAACCCCCCTGCCCGCAAACtctcc > 2:669739/1‑142 (MQ=255)
tctcTGGTAAGATTCGCGCGACGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTTACGAAGTTAACTTCGACAAGACTGAAAACGCACGCAACAAGCTCTTCTTTGAGAAGTTAACCCCGCTGCACGCAAACTCTCGt < 2:1749727/143‑1 (MQ=255)
tctGGTAAGATTCGCCCGCCGAAAGAAGGTGAAGTCTATTTTGCGGTGCTGAAAGTTACCCACGATATTGGCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAACCTCTCGTCTGCGTAt > 1:1783052/1‑149 (MQ=255)
tctGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGACGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCATCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTAt < 1:1823622/149‑1 (MQ=255)
tctGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCt > 2:941056/1‑143 (MQ=255)
ctGGTAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTCTACGCAGACTATCGTCTGCgcagg > 1:1854735/1‑145 (MQ=255)
tGGTAATATGCGTCCGCGGAAAGAAGGTGAATTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTATCTTCGACAAACCTGAAAACGCCCGCACCAAAATCCGCTTATAGTATTCAACCCTGCTGCACGCAAACTCTCGTCTGc < 2:805149/143‑1 (MQ=255)
tAAGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAAc < 1:97216/149‑1 (MQ=255)
aGATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGt > 1:1365645/1‑149 (MQ=255)
gATTCGCCCGCCGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTg > 1:1739090/1‑149 (MQ=255)
cccgccGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACCAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTg < 2:896614/143‑1 (MQ=255)
cccgccGAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTg > 2:1588656/1‑143 (MQ=255)
gccgAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAATTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTa < 2:1099388/143‑1 (MQ=255)
ccgAAAGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTc > 1:1633795/1‑149 (MQ=255)
aaaGAAGGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACgg > 2:1371365/1‑143 (MQ=255)
agaagGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTTGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCTCGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGtt < 2:1739100/143‑1 (MQ=255)
agaagGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGtt < 2:1221916/143‑1 (MQ=255)
agaagGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTg > 1:823692/1‑149 (MQ=255)
gaagGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGa < 1:417960/149‑1 (MQ=255)
aagGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGaa > 1:1566686/1‑149 (MQ=255)
agGTGAACTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTa < 2:991894/143‑1 (MQ=255)
tGAACTCTATTTTGCGCTGCTGGAAGTTAACGAAGTTACCTACGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTg < 2:782256/143‑1 (MQ=255)
aaCTCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGaa < 2:816387/143‑1 (MQ=255)
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GATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAA > CP009273/3959958‑3960241
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
