Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F34 I40 R1	11	55.0	1783796	96.5%	1721363	148.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009273	3,960,035	C→G	R87G (CGC→GGC)	rho →	transcription termination factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	3,960,035	0	C	G	100.0%	177.1 / NA	57	R87G (CGC→GGC)	rho	transcription termination factor
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (27/30); total (27/30)

TCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGA  >  CP009273/3959889‑3960177

tCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATcggc                                                                                                                                              >  2:268095/1‑149 (MQ=255)

 ccTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATcggcc                                                                                                                                             >  2:401112/1‑149 (MQ=255)

        cagcaCGCAAAGAGTGGCGAAGATATCGTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCaa                                                                                                                                      <  1:129881/149‑1 (MQ=255)

          gcaCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCCAATCGGCCGTTTCAccc                                                                                                                                    >  1:105815/1‑149 (MQ=255)

             cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTcc                                                                                                                                 <  1:379951/149‑1 (MQ=255)

                aaaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCa                                                                                                                              >  1:641806/1‑149 (MQ=255)

                         cGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCCCCCCACCGATGATa                                                                                                                     >  1:389898/1‑149 (MQ=255)

                          gAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATAc                                                                                                                    >  1:339770/1‑149 (MQ=255)

                           aaGATACCTTGGGGGACGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTggcgtttgg                                                                                                                   <  1:111343/149‑8 (MQ=255)

                                 tCTTTGGTGATGGCGTACTGGAGATATTGCAGCATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATctct                                                                                                             <  2:231559/149‑1 (MQ=255)

                                  cTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTg                                                                                                            <  1:845539/149‑1 (MQ=255)

                                   tttGGTGATGGCGTACTGGAGATATTGCAGGAAGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTgg                                                                                                           >  1:27442/1‑149 (MQ=255)

                                       gTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAg                                                                                                       <  1:111915/149‑1 (MQ=255)

                                               ggaCTGGAGATATTGCAGGATGGATTTGGTTGCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTcgccc                                                                                               <  1:783171/147‑1 (MQ=255)

                                                        atatTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGCTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAaaga                                                                                      >  1:97686/1‑149 (MQ=255)

                                                         tatTTCAGGATGGTTTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCTCCCGTCCGGATGACATCTACTTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAaagaa                                                                                     <  1:742359/149‑1 (MQ=255)

                                                           ttGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGTCAACTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGaaggaagg                                                                                   >  2:429107/1‑149 (MQ=255)

                                                           ttGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGCAAGAAgg                                                                                   >  1:655923/1‑149 (MQ=255)

                                                           ttGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAgg                                                                                   <  1:345228/149‑1 (MQ=255)

                                                           ttGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCCCTGGTAAGATTCGCCCGCCGAcagaaga                                                                                   >  1:656041/1‑148 (MQ=255)

                                                            tGCCGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCCCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGt                                                                                  <  1:1555/149‑1 (MQ=255)

                                                            tGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGt                                                                                  <  2:760377/149‑1 (MQ=255)

                                                             gCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTg                                                                                 <  1:514758/149‑1 (MQ=255)

                                                                      atTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTAtt                                                                        >  2:435762/1‑149 (MQ=255)

                                                                      atTTGGTTTCCTCCGTCCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAACCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTAtt                                                                        <  2:141884/149‑1 (MQ=255)

                                                                       tttGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTAttt                                                                       >  2:89224/1‑149 (MQ=255)

                                                                          ggTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTgc                                                                    <  1:268095/149‑1 (MQ=255)

                                                                           gTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAACTCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTCAACGCTAtttgccg                                                                   >  1:201417/1‑145 (MQ=255)

                                                                             ttCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCgct                                                                 >  2:483417/1‑149 (MQ=255)

                                                                               cctccGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCgctgc                                                               <  1:596294/149‑1 (MQ=255)

                                                                                ctccGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCgctgct                                                              >  2:771606/1‑149 (MQ=255)

                                                                                   cGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAGCGCTGTTTTgcggtcatgaa                                                           >  2:241845/1‑141 (MQ=255)

                                                                                   cGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGaa                                                           >  2:311296/1‑149 (MQ=255)

                                                                                        cGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTa                                                      <  2:339770/149‑1 (MQ=255)

                                                                                              ccgCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTTGCCAAATCGGCCGTTCCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAg                                                <  1:105967/147‑1 (MQ=255)

                                                                                               aGCTCCTACCTCGCCGGTCCTGATGACATCTACGCTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGt                                               <  2:97686/149‑1 (MQ=255)

                                                                                               aGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTCCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGCAGCTGCAGGTGATTTTGCGCTGCTGAAAGTTAACGAAGt                                               <  1:635603/149‑1 (MQ=255)

                                                                                                    cTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACt                                          >  1:208841/1‑149 (MQ=255)

                                                                                                      aCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGCAGGTGAACGCTATTTTGCGCTGCTGAAGGTTAACGAAGTTAAATTc                                        >  1:688857/1‑149 (MQ=255)

                                                                                                       ccTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACTTCGTTAACtttc                                       <  2:50729/149‑3 (MQ=255)

                                                                                                       ccTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCg                                       <  2:859870/149‑1 (MQ=255)

                                                                                                       ccTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCg                                       <  2:416587/149‑1 (MQ=255)

                                                                                                        cTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGa                                      <  1:435762/149‑1 (MQ=255)

                                                                                                        cTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGa                                      <  1:808855/149‑1 (MQ=255)

                                                                                                        cTCGCCGGTCCGGATGACATCTACGGTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAActtcgttaactttca                                      <  1:15582/149‑15 (MQ=255)

                                                                                                            ccGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGGAGTTAACTTCGACaaa                                  >  2:255389/1‑149 (MQ=255)

                                                                                                             cGGTCCTGATGACATCTACGTTTCCCCTAGCCAAAGCGGCCGTTTCAACCTCCGCACTGGTGATACCATCCCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAAc                                 <  2:750352/149‑1 (MQ=255)

                                                                                                               gTCCTGATGACATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGCGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCt                               >  1:658721/1‑149 (MQ=255)

                                                                                                                   tgatgaCATCTACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAGACCTGaaa                           >  2:4802/1‑149 (MQ=255)

                                                                                                                             tACGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGcaa                 >  2:2373/1‑149 (MQ=255)

                                                                                                                               cGTTTCCCCTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGcaaca               >  1:878652/1‑149 (MQ=255)

                                                                                                                                    ccccTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATc          <  2:472036/149‑1 (MQ=255)

                                                                                                                                    ccccTAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATc          <  2:161754/149‑1 (MQ=255)

                                                                                                                                    ccccTAGCCAAATCGGCCGTTCCAACCTCCGCTCCTGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATc          <  2:828549/149‑1 (MQ=255)

                                                                                                                                     cccTAGCCAAATCGGCCGATACAACCTCCGCACTGCCGATACCATCTCAGGTAAGATGCGCCCGCCGAAAGCAGGGGAACGCTATTGTACGCTGCTGAAAACTAACGAAGGCAACTACGACAAACCTGAAAACGCCCGCAACAAAATcc         >  1:874802/1‑149 (MQ=255)

                                                                                                                                        tAGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCctct      <  1:358989/149‑1 (MQ=255)

                                                                                                                                         aGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACTAACCTGAAAACGCCCGCAACAAAATCCTCtt     >  2:597393/1‑149 (MQ=255)

                                                                                                                                         aGCCAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCGCGCAACAAAATGCGCtt     >  2:267864/1‑149 (MQ=255)

                                                                                                                                            cAAATCGGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTga  >  2:713009/1‑149 (MQ=255)

TCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGA  >  CP009273/3959889‑3960177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A