Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A18 F25 I40 R1
|
4 |
120.6 |
3921210 |
96.6% |
3787888 |
148.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009273 |
2,860,429 |
Δ1 bp |
coding (482/993 nt) |
rpoS ← |
RNA polymerase, sigma S (sigma 38) factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,860,427 | 0 | T | . | 99.2%
| 568.1
/ ‑2.4
| 126 | coding (484/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (61/64); minor base G (1/0); total (62/64) |
| Fisher's exact test for biased strand distribution p-value = 4.92e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01 |
Only 100 of 131 total aligned reads displayed.
CGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCA > CP009273/2860279‑2860570
|
cGGTTGACGGCATCAACTTGATTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGt < 1:1771314/149‑1 (MQ=255)
gCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGttg < 2:1412602/149‑2 (MQ=255)
cTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGttgg < 1:203886/149‑3 (MQ=255)
gACGTCATCAACTGTCTTATCCACTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCTCGTGCG‑CTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGttggtt < 2:1344836/149‑5 (MQ=255)
atcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAAt > 2:1673318/1‑149 (MQ=255)
atcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAAt > 1:1906737/1‑149 (MQ=255)
tcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATc < 1:1043300/149‑1 (MQ=255)
aaCTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTTGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGc < 1:1731295/149‑1 (MQ=255)
cTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGccc < 2:315061/149‑1 (MQ=255)
cTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGCCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGccc < 1:817821/149‑1 (MQ=255)
tGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCg > 1:209438/1‑149 (MQ=255)
gtttATCCAGTTGCGCTGCGATCTCCTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGtt < 2:336398/147‑1 (MQ=255)
gCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGtt < 2:27655/149‑1 (MQ=255)
tATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑ATTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCaa > 1:1342009/1‑149 (MQ=255)
aTCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTACGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAAt < 2:499004/149‑1 (MQ=255)
tCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCCATc > 2:884928/1‑149 (MQ=255)
aGTCGCTCTGCGATCTCTTCCGCACTTGGTTCATGGCCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTc < 2:330493/149‑1 (MQ=255)
tggCTCTGCGACCTCTTCCGCACTGGGTGCATGGTCCAGCTTATGGGACAACTC‑CGGGCGTGTCCTCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTg < 1:947673/147‑1 (MQ=255)
gCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGc > 1:707892/1‑149 (MQ=255)
tctGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGa > 2:526245/1‑149 (MQ=255)
tGCGCTCTCTTCCGGCCTTGGTCCATGGTCCCGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGCTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAAt < 1:28886/149‑1 (MQ=255)
tGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATGGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGCAt > 1:1034266/1‑149 (MQ=255)
tGCGATCCCTTCCGCACTGGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GGTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAAGAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAAt < 2:95151/149‑1 (MQ=255)
gCGATTTCTTCCGCACGTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATc < 2:1840855/149‑1 (MQ=255)
gCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGCATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATc > 2:945223/1‑149 (MQ=255)
ctctTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccacca > 2:399490/1‑149 (MQ=255)
ttCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATGGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGGTCAATCGGCGGGCGCATCCACGAgat > 2:797423/1‑147 (MQ=255)
ttCCGCAATTGGTGCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTGAACGTTCAGCTCCTTGACGATGTGAATCGGCAAACGAATAGTACGGG‑GTGGTTCATAATCGCCCGTTCAAGCGTCTGGCGAATcccgccggt > 2:660819/1‑142 (MQ=255)
tCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGtt < 1:1673318/149‑1 (MQ=255)
ccacACTTGGTTCATGGTCCAGCTCATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTGCTTAACGATGGTAATCGGCAAACGACGAGGACGGG‑TTGGTTCATCAGCGCCACTTCCACCGTCTGGCGAAtacgcccggctg > 2:706023/4‑138 (MQ=255)
ccGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGtta > 2:1247261/1‑148 (MQ=255)
cTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTAt < 2:209438/149‑1 (MQ=255)
cTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTAt < 1:1231224/149‑1 (MQ=255)
ggTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGtt < 2:1171611/149‑1 (MQ=255)
gTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAGCGCATCGTACGGG‑TTGGTTCATAAACGCCCGTTCAATCGTCTGGCGGAACCACGCGGGTGCGTAtagtg > 2:79183/1‑145 (MQ=255)
ttCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCGCGTTCAATCGTCTGGCGAAGCCACCAGGTTGCGTATGTTga > 1:1871399/1‑149 (MQ=255)
tCATGGTCCAGCTTATGGGACAACTCACGTGCA‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTgag < 2:1107625/149‑1 (MQ=255)
cATGGTCCAGCTTATGGGACAACTCGCGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTgaga < 2:314099/149‑1 (MQ=255)
tCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCGGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCATCTGCCGAATCCAGCAGGCTGCGCATGTTGAGAAGCgg > 2:974878/1‑149 (MQ=255)
tCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGACCGTACACTCGTCTGGTGAATCCACCAGGTTGCGTATGTTGAGAAGCgg > 1:1337598/1‑149 (MQ=255)
ccAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGa > 2:444456/1‑149 (MQ=255)
ccAGCTTAGGGGACAACTCACGTGCG‑GTCCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGa < 1:410682/149‑1 (MQ=255)
aGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGaaa < 2:675267/149‑1 (MQ=255)
gtacacCTCACGGGCG‑GTTCGCAGGTAAAGGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTCCAAGCGTCTTGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTc < 2:1740676/147‑1 (MQ=255)
ggACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGGATCGGCAACCGAATAGTAAGGG‑GTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAACAGAGCAGGTAGCAGATCTTGAGAAGCGGAAGCCACGTTc > 2:1232461/1‑149 (MQ=255)
cAACTCTCGTGCT‑GTTCGCAGGTAAACGCTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGCTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCgg < 1:85902/149‑1 (MQ=255)
aaCTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCggg < 2:1920113/149‑1 (MQ=255)
aCTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCAAGTTCCgggg > 1:1231703/1‑148 (MQ=255)
cTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGta > 2:1345687/1‑148 (MQ=255)
cTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTc < 2:725577/149‑1 (MQ=255)
tCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGAACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCa > 1:556856/1‑149 (MQ=255)
aCGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCaaa < 1:106159/149‑1 (MQ=255)
aCGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCaaa < 1:399490/149‑1 (MQ=255)
aCGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCaaa < 2:1670574/149‑1 (MQ=255)
gTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGt > 2:1536307/1‑117 (MQ=255)
gTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGt < 1:1536307/117‑1 (MQ=255)
gTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACt > 2:1545754/1‑149 (MQ=255)
gTGCG‑GATCGCAGGTAAACATTCAGCTACTTTACGGTGTTGATGGGCAGGCGAAGAGGACGGG‑TTGTGTCATAGTCGGCCGTTCAATGGTCTGGCTGATCAACCAGGTTGCGTATGGTGAGACGCGGAAACCACGTTCCGGGTCacgca > 2:1835007/1‑145 (MQ=255)
g‑gTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTtctc > 1:1349605/1‑149 (MQ=255)
g‑gTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTtctc < 1:934353/149‑1 (MQ=255)
g‑gTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGAGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTgctc > 1:679184/1‑149 (MQ=255)
cgcttCGCAGGGAACCTTCCAGCTTCTTTACGATGTGAATCGCGAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCGGGCGAATCCACCAGGTTGCGTATGGTGAGAAGCGGAAACCACGTTCCGGGTCAAACTtct < 2:1183685/146‑1 (MQ=255)
gTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTctct > 1:627688/1‑149 (MQ=255)
tCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGGTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCAGGGTCAAACTTCTCTAc > 2:1835731/1‑149 (MQ=255)
cAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTGTGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTCCTCTACcgc > 1:916041/1‑149 (MQ=255)
gTAAACGTTCGGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACcgcgcg < 2:102212/149‑1 (MQ=255)
gTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAAACGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAGGCGGAAACCACGTTCCGGGTCAAAATtccctcccccccg > 1:873768/1‑144 (MQ=255)
aCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATc > 1:1544167/1‑149 (MQ=255)
aCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATc < 2:627688/149‑1 (MQ=255)
cGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCa < 2:1906737/149‑1 (MQ=255)
gTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGGCAAACTTCTCTACCGCGCGGATCAg < 1:1940944/149‑1 (MQ=255)
cTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGtt < 1:1296629/149‑1 (MQ=255)
cTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACATCTCTACCGCGCGGATCAGCCCCAGGtt < 2:1937540/149‑1 (MQ=255)
tttACGGTGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTg < 2:331904/149‑1 (MQ=255)
tttACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGACTCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCCCTACCGCGCGCATCAGCCCCAGGTTg > 1:1443532/1‑149 (MQ=255)
tttACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTTTGTTGAGACGCGGAAACCACGTTCCGGGTCGACCTTCTCTACCGCGCGGGTCAGCCCCAGGTTg > 2:953975/1‑149 (MQ=255)
tttACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTg < 1:635470/149‑1 (MQ=255)
tttACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTg < 2:1342009/149‑1 (MQ=255)
tttACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTg > 2:105089/1‑149 (MQ=255)
gATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGCTGCCctc > 2:1806440/1‑149 (MQ=255)
gATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGCGTCAGCCCCAGGTTGCCatc > 2:887355/1‑149 (MQ=255)
gATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGGCAAACTTCTCTACCGCGCGGACCAGCCCCAGGTTGCCctc > 1:793368/1‑149 (MQ=255)
tgtgAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTTCCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCtt < 1:945223/149‑1 (MQ=255)
tgtgAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAACCCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCtt < 1:878086/149‑1 (MQ=255)
tgtgAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCtt < 1:688813/149‑1 (MQ=255)
tgAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCTGATCAGCCCCAGGTTGCCCTCTTCg < 1:1178464/149‑1 (MQ=255)
gAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTTGGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGa > 1:154384/1‑149 (MQ=255)
gAAGCGGCGAACGGATAGTACGGG‑TTGGTTCAGAGTCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGGGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGa < 2:763121/149‑1 (MQ=255)
aTCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATa < 2:707892/149‑1 (MQ=255)
cGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAg < 1:599555/149‑1 (MQ=255)
ggCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGTCCCAGGTTGCCCTCTTCGATAAgg < 1:1467175/149‑1 (MQ=255)
ggCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGTCCCAGGTTGCCCTCTTCGATAAgg < 1:1467079/149‑1 (MQ=255)
gCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAggg > 2:577914/1‑148 (MQ=255)
aaaCTAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGTGACAACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAAGTTGCCCTCTTCGATAGGGGcc > 1:1437939/1‑149 (MQ=255)
aaCGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCa < 2:1544167/149‑1 (MQ=255)
aCGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGAGCAGCCCCAGGTTGCCCTCTTCTATAAGGTCCAg > 2:783573/1‑149 (MQ=255)
aCGAATAGTACGGG‑TTGGTCCATACTCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAg < 1:3564/149‑1 (MQ=255)
aaaTAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGCGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGCATCGGCCCCAGGTGGCCCTCTTCCATAAAGTCAAGCa > 2:382889/2‑149 (MQ=255)
aaTAGGACGGG‑GTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCaa < 2:1651132/149‑1 (MQ=255)
tACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCCGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCa > 2:1800747/1‑149 (MQ=255)
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CGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCA > CP009273/2860279‑2860570
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
