Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F191 I0 R1 49 68.0 1456600 97.2% 1415815 140.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC CP000730 1,302,967 Δ4 bp 100% coding (325‑328/714 nt) USA300HOU_1209 → possible GntR family transcriptional regulator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP000730 1302967 1302970 4 74 [0] [1] 75 USA300HOU_1209 possible GntR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 13029660 (0.000)70 (1.120) 49/256 NT 100% coding (324/714 nt) USA300HOU_1209 possible GntR family transcriptional regulator
?CP000730 1302971 = 0 (0.000)coding (329/714 nt) USA300HOU_1209 possible GntR family transcriptional regulator

GATK/CNVnator alignment

N/A